Methylobacterium nodulans: Mnod_6047
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Entry
Mnod_6047 CDS
T00839
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mno
Methylobacterium nodulans
Pathway
mno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mnod_6047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mno03019
]
Mnod_6047
03009 Ribosome biogenesis [BR:
mno03009
]
Mnod_6047
Enzymes [BR:
mno01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Mnod_6047
Messenger RNA biogenesis [BR:
mno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mnod_6047
Ribosome biogenesis [BR:
mno03009
]
Prokaryotic type
rRNA processing factors
Mnod_6047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zinc_ribbon_9
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ACL60872
UniProt:
B8IU14
LinkDB
All DBs
Position
complement(6153288..6156425)
Genome browser
AA seq
1045 aa
AA seq
DB search
MANKMLIDASHPEETRVVTVKGSKVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPIADRLALLEEEAQAEREQAERPEREPDERRRRRRRGRR
AEAASAKADSVVSAPAEGLEPEEGENSAAETVSAAPDMTDAAPDAADAAPAAETGAAAQE
VPAQEVSTQEASQEAPAGEPPTEEAPAVAAGETPAADAAPAEAPATIAAEVAPEAPAPEE
PVAPEAAAVPSETEPAPAEPVAADAAEPASGPAEAEAEPAVAAEAAPAAATAVSADEADD
QDADEDEDREDDEDEARTEADEADEDEDDESDEEEGSDEEEGEDEEPVVEQVGGRGDALA
EIPDRPRAPRRHYKIQEVIKRRQVILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGR
GGGISRKITSAADRKRLKEIASDLEVPEGMGVILRTAGASRTKPEIKRDFEYLMRLWESV
RELTLSSSAPALVYEEGSLIKRAIRDLYTKDIEEVLVSGEDAYREAKDFMRMLMPSQSKV
VKPYRDPTPLFARYGVEQQLDAMFSNHVSLRSGGYLVINPTEALVSIDVNSGRATREHDI
EDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVERKLNECLKDDRARIQ
VGRISPFGLLEMSRQRIRTGVLESSSVPCPHCGGSGFVRATSSVALQILRAIEEALIKSS
SHNLILRTRTDVALYILNQKRVHLRELETRFGVTITIAADERLPATSAFNLDRGEPAQPP
EPRLPVTSIRAEAVEPPPLEDEEEEETAEEAEGAEESAEAAESSEDEGGGRRRRRRRRRR
ARGDGRAVEAEAETEAGAEAEPEGETVSAEGPVSIPITEGGEAPSVREGDEGGGRRRRRG
RRGGRSRDRHEEEFGHIGDEVVVGEIEAAEAGPAGGSLAQDALAEEIVAVGEITGPSPEA
VAPAGAAEIPDLSAIDREAATVAAIEALAPGAPAPGEAAAAEPAPAPAAPEPEPEPVAVV
LTPPDPDRPKRAGWWSRTKAAIGGH
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaagatgctcatcgatgcctcccacccggaagagacccgggtggtgacggtc
aagggatcgaaggtcgaggaattcgacttcgaagccgctaaccgccgccagctgcgcggc
aacatctacctcgccaaggtcacccgggtcgaaccctccctgcaggccgccttcgtcgag
tatggcggcaaccggcacggctttctcgccttcagcgagatccatcccgactactaccag
atcccgatcgccgaccggctcgccctcctggaggaggaggcgcaggccgagcgcgagcag
gccgagcgccccgagcgggagcccgacgagcgccgtcgccgccgccgccgcggccggcgc
gcggaggccgcctccgccaaggccgattccgtggtgagcgccccggccgaggggctcgaa
cccgaggagggcgagaactcggccgccgagaccgtctccgcggcgccggacatgaccgac
gcggcgccggacgcagccgacgcggcccccgcggccgagaccggggcggccgcccaggag
gtgccggcccaggaagtgtcgacccaagaggcatcccaagaggcaccggccggggagcct
ccgaccgaggaggcgcccgcggtcgccgcgggcgagacaccggccgccgacgccgcgcct
gcggaagcccccgcgacgatcgccgccgaggtcgcgcccgaggcgcctgcgccggaggag
cctgtggcgcccgaagccgccgcggtcccgtcggagacggagccggccccggccgagccg
gtcgccgcggacgcggccgagcccgcttccgggccggccgaggctgaggccgagccggcg
gtggccgccgaggcggcgcccgccgcggccacggccgtttccgccgacgaagccgacgat
caggatgccgatgaggacgaggatcgcgaggacgacgaggacgaggcccgcaccgaggcg
gacgaggcggacgaggatgaggacgacgagtccgacgaggaagaggggtccgacgaggaa
gagggcgaggacgaggagcccgtcgtcgagcaggtcggcggccgcggcgacgcgctcgcc
gagatccccgaccggccccgcgcgccccgccgccactacaagatccaggaggtcatcaag
cgccgccaggtgatcctggttcaggtggtcaaggaggagcgcggcaccaagggcgctgcg
ctcaccacctacctgtcgctcgccggccgctactcggtgctgatgcccaataccggccgg
ggcggcggcatctcgcgcaagatcacgagcgcggccgaccgcaagcgcctcaaggagatc
gcctccgacctggaggtgccggaggggatgggcgtcatcctgcgcacggccggcgcctcg
cgcaccaagcccgagatcaagcgcgacttcgagtacctgatgcggctgtgggagagcgtg
cgcgagctgacgctctcgtcctcggcgccggccctcgtctacgaggagggctcgctgatc
aagcgcgccatccgcgacctctacaccaaggacatcgaggaggtcctggtctcgggcgag
gacgcctaccgcgaggccaaggacttcatgcggatgctcatgccgagccagtccaaggtg
gtgaagccctatcgcgatccgacgccgctcttcgcccgctacggggtcgagcagcagctc
gacgcgatgttctccaaccacgtgtccctgcgctcgggcggctacctcgtcatcaacccg
accgaggcgctcgtctccatcgacgtgaattcagggcgcgccacgcgcgagcacgacatc
gaggacaccgcgctcaagacgaatctggaggccgccgaggaggtggcccgccagctccgc
ctgcgcgacctcgcgggcctgatcgtcatcgacttcatcgacatggaggagaagcgcaac
aaccgggcggtcgagcgcaagctgaacgagtgcctgaaggacgatcgggcgcgcatccag
gtcgggcgcatctcgcccttcggcctgctcgaaatgtcgcgccagcgcatccgcaccggc
gtgctcgaatcctcctccgtgccctgcccgcattgcggcggctcgggcttcgtgcgcgcg
acctcgtcggtcgccctgcagatcctgcgggccatcgaggaggcgctgatcaagtcgagc
agccacaacctgatcctgcgcacccgcaccgacgtggcgctctacatcctcaaccagaag
cgcgtgcatctgcgcgagctggagacgcgcttcggggtcacgatcacgatcgcggccgac
gagcgcctcccggccacctcggccttcaacctcgatcgcggcgagccggcgcagccgccc
gagccgcgcctgcccgtcaccagcatccgggccgaggccgtcgagcctccgccgctcgag
gacgaggaagaggaggagaccgcggaggaagccgagggcgccgaggaatccgccgaggcg
gcggaatcctccgaggacgagggcggcggccgccgtcggcgccgccgtcgccgtcgccgc
gcccgcggcgacggccgcgcggtcgaggcggaggcagagacggaggcgggagccgaggcc
gagccggagggcgagaccgtgtccgccgaggggccggtctcgatcccgatcaccgagggc
ggcgaggcgccgtccgtccgggagggcgacgagggcggcgggcgccggcgtcggcgcggt
cgccgcggcgggcgcagccgcgatcgccacgaggaggagttcggccatatcggtgacgag
gtcgtggtcggcgagatcgaggccgccgaggcgggtcctgccggcggcagcctcgctcag
gacgccctcgcggaggagatcgtcgccgtcggcgagatcaccgggccctcgcccgaagcg
gtcgcaccggccggggccgccgagatccccgacctctcggccatcgaccgcgaggccgcc
accgtggcggcgatcgaggcgctggcgcccggcgctccggcgcccggagaggccgcggcc
gccgagcctgcgcccgcccccgcggctcccgagcccgagccggagcccgtcgcggtggtg
ctgacgccccccgatccggaccggcccaagcgggccggctggtggtcgcgcaccaaggct
gcgatcggcggccactga
DBGET
integrated database retrieval system
