Methylobacterium oryzae: MOC_5335
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Entry
MOC_5335 CDS
T03299
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mor
Methylobacterium oryzae
Pathway
mor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MOC_5335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mor03019
]
MOC_5335
03009 Ribosome biogenesis [BR:
mor03009
]
MOC_5335
Enzymes [BR:
mor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MOC_5335
Messenger RNA biogenesis [BR:
mor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MOC_5335
Ribosome biogenesis [BR:
mor03009
]
Prokaryotic type
rRNA processing factors
MOC_5335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AIQ93090
UniProt:
A0A089P2U1
LinkDB
All DBs
Position
complement(5346660..5349719)
Genome browser
AA seq
1019 aa
AA seq
DB search
MANKMLIDAMHPEETRVVTVHGSRVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFNEIHPDYYQIPLADRQALLEEDARDAEEHREREERRRRSPRRSRGRRAE
ARARGADETVSAEDGHEASQTEDQAEIRTEAGFDPAAEPDTLAEHPEAVREALASETAAG
DIPVALDEPARDEPAQAAEPAAEAPFDAAPAEAAPAKAQAAHDMAGPVADDAAAEQDAPV
EAEARIAVAGALTVAEAPAESLAEETAEPADADEADDASDEDDEESDDEDEDEDESEDDE
DESDEDEDESDEDSDDPDAEPKIAQVGGNGDALAEIPERPRHYRRQYKIQEVIKRRQIIL
VQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITSAADRKRLKEVVQDLEV
PEGMGVILRTAGASRSKPEIARDFEYLMRLWESVRELTLTSMAPALVYEEGSLIKRAIRD
LYNKDLDEVLVAGEDAYREAKDFMRMLMPGQSKVVKPYRDPTPIFARFGVEQQLDAMFSS
HVSLKSGGYLVINPTEALVSIDVNSGRATREHDIEDTALKTNLEAAEEVARQLRLRDLAG
LIVIDFIDMEEKRNNRAVEKKLNECLKNDRARIQVGRISPFGLMEMSRQRIRTGVLESSS
IPCAHCGGSGFVRATASVALHILRSIEEALLKSASHNLVLRTRTEVALYILNQKRGHLRE
LEMRFGVTITIAADERLAATAAFQLDRGEPAQRAEGPVTGVRAQAISPTTEFEDEDEEAD
EVEAEVEADAEGEAEEGRAETREEGEGRRRRRRRRRRGGRQDGRAEEDRGDDDRQEGERS
DEDGRDEDWDGEEPAAAEAPAEAVAAEAGETDEAVAGPDEAARAEDEGGRRRRRGRRGGR
GRSEGRTRDAAETEDAPDAVGETVALSAEEPVSAQAVAEAVEAAPAAGRTETAVDLPVAE
AEAPVPADREPAAAPDAATAAPAEVPAEPVAVVLTPPADPDRPKRAGWWSRTKAALTGE
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaaaatgctgatcgacgcgatgcacccggaggagacccgggtcgtcacggtc
cacgggtctagggtcgaggagttcgatttcgaagccgccaaccggcgtcagctgcgcggc
aacatctatctcgccaaggtgacccgggtggagccgtcgctccaggcggcgttcgtggag
tatggcggcaaccgccacggcttcctggccttcaacgagatccaccccgactactaccag
atcccgctcgccgaccggcaggcgctcctcgaggaggacgcccgcgacgccgaggagcac
cgcgagcgtgaggagcgccgccgccggtcgccgcgccgctcccgcggccgccgcgccgag
gcccgcgcccgcggcgccgacgagaccgtgagcgccgaggacgggcacgaggcgtcccag
accgaggatcaggcagagatccggacggaagccggtttcgatccggccgccgagcccgat
acgctcgccgagcatcccgaggccgtgcgggaggccctcgcttccgagaccgcggccggc
gacatccccgtggcgctggacgagccggcacgggacgagccggcgcaggccgccgagccg
gcggccgaggcgccgttcgacgctgcccccgccgaggccgcccctgccaaggcgcaggcg
gcgcacgacatggccgggccggtcgctgacgacgccgccgccgagcaggacgccccggtc
gaggccgaggcccgcatcgccgtggcgggggcgctgaccgtcgccgaagcgccggccgag
tccctcgcggaggagaccgccgagccggcggacgccgacgaggcggatgacgcgtccgac
gaggacgacgaggaatccgacgacgaggatgaggacgaggacgagtcggaggacgacgag
gacgagtccgacgaggatgaggacgagtcggacgaggattccgacgatcccgacgccgag
cccaagatcgcccaggtcggcggcaacggcgacgccctggccgagatccccgagcggccc
cgccactaccgccgccagtacaagatccaggaggtgatcaagcgccgccagatcatcctg
gttcaggtggtcaaggaggagcgcggcacgaagggcgcggcgctcaccacctacctgtcg
ctcgccggccgctactcggtgctgatgcccaataccggtcgcggcggcggcatctcccgg
aagatcacctcggcggccgaccgcaagcgcctcaaggaggtcgtgcaggatctggaggtg
cccgaagggatgggcgtcatcctgcgcaccgccggcgcctcgcgctccaagcccgagatc
gcccgcgacttcgagtacctgatgcggctgtgggagtcggtccgcgagctgacgctgacc
tcgatggcgcccgcgctggtctacgaggaaggctcgctgatcaagcgcgccatccgcgac
ctgtacaacaaggatctggacgaggttctggtcgccggcgaggacgcctaccgcgaggcc
aaggacttcatgcggatgctgatgcccggccagtccaaggtcgtgaagccctaccgcgac
ccgacgccgatcttcgcccgcttcggcgtcgagcagcagctcgacgcgatgttctccagc
cacgtctcgctgaagtccggcggctatctggtgatcaacccgaccgaggccctggtctcg
atcgacgtgaactcgggccgcgccacccgcgagcacgacatcgaggacaccgccctcaag
acgaacctggaggccgccgaggaggttgcccgccagctgcgcctgcgcgacctcgcgggc
ctgatcgtcatcgacttcatcgacatggaggagaagcgcaacaaccgcgccgtcgagaag
aagctgaacgagtgcctgaagaacgaccgcgcccgcatccaggtcggccggatctcgccc
ttcggcctcatggagatgagccgccagcgcatccgcacgggcgtgctcgaatcctcctcg
atcccctgcgcccattgcggcggctcgggcttcgtgcgcgccaccgcctcggtggccctg
cacatcctgcgctccatcgaggaggcgctgctcaagtcggcgagccacaacctcgtgctg
cggacccgcaccgaggtcgccctctacatcctcaaccagaagcgcgggcacctgcgcgag
ctggagatgcgcttcggcgtgaccatcacgatcgcggccgacgagcggctggccgccacc
gcggccttccagctcgaccgcggcgagccggctcagcgcgccgagggtccggtgacgggt
gtgcgcgcccaggcgatctcgcccaccacggagttcgaggacgaggacgaggaggccgac
gaggtcgaggccgaggtcgaggcggatgccgagggcgaggccgaggagggccgcgccgag
acgcgcgaggagggtgaaggccgccgccgccgccgccgccgccgccgccggggcgggcgt
caggacggtcgcgccgaggaggatcgcggcgacgatgatcgccaggagggcgagcgttcg
gacgaggacggtcgggacgaggactgggacggcgaggagccggccgcagccgaggcgccg
gccgaagccgtcgcagccgaggccggggagaccgacgaggccgtggccggccccgacgag
gcggcccgcgccgaggacgagggcggacgccgccgccgccgcggacgccgcggcggtcgc
ggacggagcgagggccgcacgcgggacgccgccgagacggaggatgctcccgacgcggtg
ggcgagacggtggccctgtcggcggaagagccggtgagcgcccaggcggtggcggaggcg
gtcgaggccgccccggcggccggccgcaccgagaccgccgtggatctgccggtggcggaa
gccgaagcccctgtgccggccgaccgggagcccgccgctgcgccggacgccgcgaccgct
gccccggcggaggtccccgcggagcccgtggcggtggttctgacgccgcccgccgatccg
gaccgtcccaagcgcgcgggctggtggtcgcgcaccaaggccgctctgacgggcgaatga
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