Micromonospora terminaliae: GCE86_12865
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Entry
GCE86_12865 CDS
T06293
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mtem
Micromonospora terminaliae
Brite
KEGG Orthology (KO) [BR:
mtem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mtem03016
]
GCE86_12865
Enzymes [BR:
mtem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GCE86_12865
Transfer RNA biogenesis [BR:
mtem03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GCE86_12865
Prokaryotic type
tRNA splicing ligases
GCE86_12865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QGL47839
UniProt:
A0A6I5UBZ2
LinkDB
All DBs
Position
complement(2868682..2869878)
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AA seq
398 aa
AA seq
DB search
MGFTPLAGTRAPVRVWTDPYTIEAQAARQLRNIGTLPWVHGVAVMPDVHFGKGATVGSVI
AMRQAVSPAAVGVDIGCGMSAVRTSLTAADLPDDLGPLRSAIEAAIPVGFAMRADAVDPR
RIRGLEQGGWDDFWRFGTLDRKVAQLETRAQRQLGTLGGGNHFIEVCLEQGGPDDGRVWL
MLHSGSRNIGKELAERHMAVARGLPHNVDLPDRDLAVFLAGTPEMDAYRRDLWWAQEYAR
RNRAVMLALLCGVVRDEFPQVGYDEPISCHHNYVAEESYDGVEVLVTRKGAIRAGRGDLG
IIPGSMGTGSYVVRGKGNLDAYCSASHGAGRRMSRGQAKRTYSTADLAAQTAGVECRKDA
GVVDEIPGAYKDITQVMAQQEDLVEVVAHLKQVVCVKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcaccccgctggccggtacccgggcgccggtccgggtctggaccgacccctac
acgatcgaggcgcaggcggcccggcagctgcgcaacatcggcacgctgccctgggtgcac
ggcgtcgccgtcatgccggacgtgcacttcggcaagggcgccacggtgggctcggtcatc
gccatgcggcaggccgtctcgccggccgcggtcggcgtcgacatcggctgcggcatgtcc
gcggtgcgcacctcgctcaccgcggccgacctgcccgacgacctcggcccgctgcggagc
gccatcgaggcggccatcccggtcggcttcgccatgcgcgccgacgcggtcgacccgcgc
cggatccgtgggctggagcagggcggctgggacgacttctggcgcttcggcaccctcgac
cggaaggtggcgcagctggagacccgggcccagcgccagctgggcaccctcggcggcggg
aaccacttcatcgaggtctgcctggagcagggcggcccggacgacggccgggtctggctg
atgctgcactcgggctcccgcaacatcggcaaggaactcgccgagcggcacatggcggtg
gcccgcgggctgccgcacaacgtggacctgcccgaccgggacctcgcggtgttcctcgcc
ggcaccccggagatggacgcctaccgccgggacctgtggtgggcgcaggagtacgcgcgc
cgcaaccgggccgtcatgctcgccctgctctgcggggtggtgcgggacgagttcccgcag
gtcggctacgacgagccgatctcctgccaccacaactacgtggcggaggagagctacgac
ggggtcgaggtgctggtgacccgcaagggcgccatccgggccggccggggcgacctgggc
atcatcccggggtcgatgggcaccgggtcgtacgtcgtgcgcggcaagggcaacctcgac
gcgtactgctcggcgtcgcacggggccgggcggcggatgtcgcgggggcaggcgaagcgg
acgtacagcaccgccgacctggcggcgcagacggcgggcgtggagtgccgcaaggacgcc
ggggtggtcgacgagattcccggcgcgtacaaggacatcacccaggtgatggctcagcag
gaggacctggtcgaggtggtcgcccacctcaagcaggtcgtctgtgtgaagggttga
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