Medicago truncatula (barrel medic): 25498704
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Entry
25498704 CDS
T01716
Name
(RefSeq) E3 ubiquitin-protein ligase HAKAI homolog
KO
K15685
E3 ubiquitin-protein ligase Hakai [EC:
2.3.2.27
]
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25498704
04131 Membrane trafficking [BR:
mtr04131
]
25498704
04121 Ubiquitin system [BR:
mtr04121
]
25498704
Enzymes [BR:
mtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
25498704
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
25498704
Membrane trafficking [BR:
mtr04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
25498704
Ubiquitin system [BR:
mtr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
25498704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
Prok-RING_4
zf-RING_UBOX
zf-RING_5
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
25498704
NCBI-ProteinID:
XP_013449090
UniProt:
A0A072U0E3
LinkDB
All DBs
Position
7:31085556..31101994
Genome browser
AA seq
434 aa
AA seq
DB search
MLQIRLSKNPSSDGSAGVKQSPVETVTVACPDHLVLADLPVAKGIGIATASSVVRNIGRR
SRRQLGERVHFCVRCDFPIAIYGRLSPCDHAFCLDCARSDSSCYLCEERIQKIQTIKVME
GILICAAPHCLKSFLKRVDFESHIHEFHADLLRPNADKEDGNESEAQSVRQPTASDSTAR
GPIRQVFSPGSNSQHDLEDRTRRQPPRDQAPSRPAMQQKPPFFGQQHHPSDSMSGSVGGT
QQGFHQQSFDMQQHPPQEPVQFTDRQQSVGPDNSFPEYPTMHPAQPTNVPPHPNTMLNPP
MPFGYPPFLQDRAQPFYAAPYDMPRQDSSSDIGGDPNSLMGYPQGVPNGPNFQGNYPQPW
NAAGVPFEQAQGGGMAVDPRDSKDILAPQPMALPPPPPPPAHMLKPNYYPGDHGHDGKSY
GWQHDNRDSFNAQG
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgcttcagattcggcttagtaagaatccatcctctgatgggtcggcaggcgtgaagcaa
tcgcctgttgagactgttacggttgcctgccctgaccatttggtccttgctgatcttcct
gttgcaaagggcattggtatagctactgcttcttccgttgttaggaatattggtcgcaga
tctcgtcgccagcttggtgagcgagttcatttctgtgttcgatgtgattttccgattgcg
atttatggaaggctgagcccttgtgaccatgctttctgtctcgattgtgctagaagtgat
tcatcgtgctacctgtgtgaagaacgaatccagaagattcagactatcaaagtgatggaa
ggaatcctgatatgtgcagctcctcattgtctcaagtcattcttgaagagagttgatttt
gaatctcatatccatgaattccacgccgatcttcttcgccccaatgcagataaagaagac
ggaaatgagtcagaagcacaaagtgttagacaacctacagcctcagactccactgctcga
ggccccataaggcaagttttttctccaggttcaaattctcaacatgatctggaagacaga
acccgtcggcaaccaccaagagatcaagctccttcaaggccagcaatgcagcaaaagcca
ccatttttcggccaacaacatcacccttcagattccatgtctggttctgtcggaggtacg
cagcagggctttcatcaacaaagtttcgacatgcagcagcaccccccacaagaacctgtt
cagtttactgacaggcagcaatcagttggtccagataactcatttcctgagtatccaaca
atgcaccctgcacaacccaccaatgttcccccacacccaaacacaatgctgaacccacct
atgccatttggttatccccctttcctgcaagaccgagctcaaccattttatgctgctccc
tatgatatgcctaggcaggactcgtcttctgatattggtggagacccaaattcattaatg
ggttacccacaaggggtcccaaatggcccaaactttcaaggaaattatccccagccctgg
aatgcagcaggtgttccttttgaacaagcacaaggtggtggtatggctgtggatccaagg
gattccaaagatatattggcaccacagcccatggctctgccaccaccaccaccacctccg
gcccacatgttgaaaccaaactactatcctggtgatcatggacatgatggtaaaagttat
ggttggcagcatgataaccgtgatagctttaatgctcaaggctga
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