Moritella viscosa: MVIS_2119
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Entry
MVIS_2119 CDS
T03770
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mvs
Moritella viscosa
Pathway
mvs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MVIS_2119 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvs03019
]
MVIS_2119 (rne)
03009 Ribosome biogenesis [BR:
mvs03009
]
MVIS_2119 (rne)
Enzymes [BR:
mvs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MVIS_2119 (rne)
Messenger RNA biogenesis [BR:
mvs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MVIS_2119 (rne)
Ribosome biogenesis [BR:
mvs03009
]
Prokaryotic type
rRNA processing factors
MVIS_2119 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
YTV
Motif
Other DBs
NCBI-ProteinID:
CED60078
UniProt:
A0A090K8E7
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All DBs
Position
1:complement(2439937..2443413)
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AA seq
1158 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEISRTYFKQGTGKQRGRPSIKDVVAEGTEVIVQIEKEERGNKGAALTTF
ISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALATLELPEGMGLIVRTAGVGKSAEE
LDWDLKVLLNHWQAIQDSAKDRQGTFLIHQESNVIARAIRDYLRRDIGEILIDHPKAFEE
AKSRIKLIRPDFIDRIKLYQGDVPLFNHYQIETQIESAFQREVRLPSGGSIVIDPTEALT
SIDINSARATRGGDIEETALNTNLEAADEVARQLRLRDLGGLVVIDFIDMGPVKNQREVE
NCLRDAVRQDRARIQLGRISRFGLMEMSRQRIRPSLGESSTHVCPRCNGQGTIRDNESLA
LSILRLIEEESLKENTNHIVAQVPVPVAAYLLNEKRNSILRLEKRYKVKSFIIPNENLQT
PHFEVSRVKADDDNSELSSTELTQSREFTRYEPKVNNETVQPLVKQINTLEEKTSKPTQA
VKKVTQSAKPKASTQAKAVKPVVEKESVFSRIGKAISEFFSNDEKVVVKETVKETPKKTV
TEKTSNNRHNDEPRKPRTRRNRKPRTPDNVENKQQDANKKVNVEPKQHKKLDEKQKTHNQ
EKLPTQTKNAKEESSSQNQAVLAERRQRRNMRKKVRVNNEQKVSAELEQTPATANVSKTS
KSDVNTQSAKRTRRGPKNAKTNDVAKAETAKSVTTEVTKPVTTEAAKPVTAEVAKPVTAE
VAKPVTAEVTKPVTPAVAKPVTAEVAKPVTAAVAKPVTAEVTKPVTAEVTKPVTAEVTKP
VTAEVTKPVTAEVTKPVTAEVLRPVTAAVTKPVTAEVTKPVTAEVTKPVTAEVTKPVTAA
VTKPVTAEVTKPVTAEVTKPVTAAVTKPVTAEVTKPVTAEVTKPVTAAVTKPVMHTAAAA
KPAPVIAEAILTVTPTAKASASRVKIETKSVTRQMHTAPAARPGAAPAVTVEEAPSEIEV
VAPFEIEAPTPLDVDVPFEIEAPTPLDVDVPFEIEAPAPLDVDVPFEIEAPAPLGIDEPF
AYQPIEVISLPALQAQGTTSKKTNFTVKMATPQKVSPSTINFVAKVGVVQRSSIDVAAGP
AGSQFASSQSKSPTTLAK
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgcaactcaaaaagaagagttgcgcgttgcgctagttgat
gggcaacgcctttatgatctagatattgaaagccctggccatgaacaaaagaaagcgaat
atctataaaggtaaaattacccgtgtagaaccaagcttagaagctgcttttgttgattac
ggtgcagaccgccacggtttccttcctcttaaagaaatctctcgcacttacttcaaacaa
ggtactggtaagcaacgtggacgtccaagcattaaagatgttgttgcagaaggtacagaa
gtaattgttcagatcgaaaaagaagaacgtggtaacaaaggtgctgcattaacaaccttc
atcagtttagctggtagttatcttgttctgatgccaaacaatcctcgtgcaggcggtatt
tcacgtcgtatcgaaggtgatgagcgtactgaactcaaatctgcgcttgctacgttagaa
ttaccagaaggcatgggactcattgttcgtactgctggcgtaggtaaatctgcagaagag
ctagattgggaccttaaagtacttttaaatcactggcaagcaattcaagatagcgcaaaa
gatcgacaaggtactttcttaatacatcaagaaagtaacgtgatagcgcgtgctattcgt
gattatcttcgtcgagatattggtgaaatactcattgatcatccaaaagcatttgaagaa
gctaaaagccgcatcaaattaatacgcccggactttatcgaccgtattaaattgtatcaa
ggtgatgtgcctttattcaatcactaccaaattgaaactcaaatcgaatcagcttttcaa
cgcgaagttcgtctaccttcaggcggttcaattgttattgacccaactgaagcattaaca
tcaattgatattaactctgcacgtgcaacacgcggtggtgatattgaagaaacggcatta
aatactaacttagaagccgcagatgaagttgctcgtcaactacgcctacgagatcttggt
ggccttgttgttatcgattttatcgatatgggcccagttaaaaaccaacgtgaagttgaa
aactgtttacgtgacgcagtacgacaagatcgagcacgaattcaattaggtcgtatctct
cgatttggtctaatggaaatgtctcgtcaacgtatccgtccttctctgggtgagtcaagt
acgcatgtttgccctcgctgtaatggtcaaggtacgatccgtgataatgaatctttagca
ctgtctattctacgtttaatcgaagaagagtctctaaaagagaatacaaatcacatcgta
gcgcaagtacctgttccagttgctgcttacctattaaatgaaaaacgtaactcaatccta
cgtttagagaaacgttataaagttaaaagctttatcattccaaatgagaacttacaaaca
cctcattttgaagtttctcgtgttaaagctgatgacgataactcagaattatcgagcact
gaactgacacaatcacgtgaattcactcgttatgaaccaaaagtaaataacgaaacagtt
caacctcttgtgaagcaaattaacacacttgaagagaaaacaagtaaaccaactcaagca
gttaaaaaagtaacgcaaagtgcaaaacctaaagcatctactcaagctaaagcagtgaag
cctgtagtagaaaaagaatctgtatttagccgtattggtaaagcaatttctgagttcttc
agtaacgacgaaaaagttgtcgtaaaagagacagttaaagaaacacctaaaaagacggta
acagaaaaaacatcgaacaaccgtcataatgatgagcctcgtaaaccacgtactcgtcga
aatcgtaaacctcgaactcctgataatgttgagaacaaacaacaagacgctaataaaaaa
gtcaatgttgaacctaaacagcataagaagttagatgaaaaacaaaaaactcacaatcaa
gaaaagttgcctacacagactaaaaatgcgaaagaggaaagcagctcacaaaatcaagct
gttttagccgaacgtcgccaacgccgaaatatgcgtaaaaaagtacgtgttaacaatgaa
caaaaagtatctgcagaattagaacaaacacctgcaacagctaatgtttcaaagacgtcc
aagtctgatgtaaatacgcaatcggctaaacgcactcgtcgcggccctaaaaatgctaaa
actaacgatgtagcaaaagctgaaacagctaagtccgttacaactgaagtaactaagcct
gtaacgactgaagcagctaaacctgtaacagctgaagtagctaagcctgtaacggctgaa
gtagctaagcctgtaacggctgaagtgactaaacctgtaacgcctgcagtagctaaacct
gtaacggctgaagtggctaaacctgtaacggctgcagtagctaaacctgtaacggctgaa
gtgactaaacctgtaacggctgaagtgactaaacctgtaacggctgaagtaactaaacct
gtaacggctgaagtaactaaacctgtaacggctgaagtgactaaacctgtaacggctgaa
gtactaagacctgtaacggctgcagtaactaagcctgtaacggctgaagtgactaaacct
gtaacggctgaagtaactaaacctgtaacggctgaagtaactaaacctgtaacggctgca
gtaactaaacctgtaacggctgaagtaactaaacctgtaacggctgaagtaactaaacct
gtaacggctgcagtaactaaacctgtaacggctgaagtaactaaacctgtaacggctgaa
gtaactaaacctgtaacggctgcagtaactaaacctgttatgcatacagctgcagcagct
aaacctgcccccgtaatagctgaagctattcttactgttacaccgacagcgaaagcatct
gctagccgtgtaaagattgaaactaaatctgtaacacgtcaaatgcacacagcaccagca
gctcgtccaggtgcagctccagctgttactgttgaggaagcaccttctgaaattgaagta
gtagctccttttgagattgaagcaccaactcctcttgatgttgatgtaccttttgagatt
gaagcaccaactcctcttgatgttgatgtaccttttgagattgaagcaccagctcctctt
gatgttgatgtaccttttgagattgaagcaccagctcctcttgggattgacgaacctttt
gcctatcaacctattgaagttatctctttacctgcattacaagcacaagggacaacttca
aagaaaactaacttcacagttaagatggcaacacctcagaaagtttcaccttcaacaatt
aattttgttgctaaagtaggtgtagtacagcgctcatcaattgatgttgcagctggacct
gctggtagccaatttgcttcttcacagagtaaatcgccaaccacattagctaaataa
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