Natrinema pellirubrum: Natpe_1666
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Entry
Natpe_1666 CDS
T02425
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
npe
Natrinema pellirubrum
Brite
KEGG Orthology (KO) [BR:
npe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
npe03016
]
Natpe_1666
Enzymes [BR:
npe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Natpe_1666
Transfer RNA biogenesis [BR:
npe03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Natpe_1666
Prokaryotic type
tRNA splicing ligases
Natpe_1666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Intein_splicing
Hint
META
Mus7
Motif
Other DBs
NCBI-ProteinID:
AGB31563
UniProt:
L0JL38
LinkDB
All DBs
Position
1638722..1641619
Genome browser
AA seq
965 aa
AA seq
DB search
MTTYDANGITLERVREYVWEIPREGDMRVPARVLASEALLEQIEDDKTLEQIKNTTHLPG
ITDHAICMPDGHQGYGFPVGGVGALDAENGCISPGAVGYDINCLTGDSEVLLEYGRRTPI
ETLEDRFEAENAMVVDNDLTPSPIRLFTERENAAVYEVETETGDQITATADHPFRTPDGM
RPLEKLSEGDEVHIQPFHGVPDEEPDEFTVLSKDDFADENPQLVRALEKRDLLPLQSTDD
AFNRFLKLVGFHTGDGAIGSGGQTWFYGEPEDLESIRNDIEAIGFTPSKIYERDRSHEID
GKTFETTEYSVRSTSKAFQKMLLALGAPDGRKIESDFTTPWYFARLTNWQKALYVSAYFG
AEMNAPAAQHDKNLYCPKVSQTRVADVADAGEKFMGELASFLDDLGIETNEIERFETDSS
ADRETIRLRLGIKNDSENLITFFSTVGYRYNHEKRQKAAKAVQYLKTKEAVIDRRATIAR
EAKAMADGGTPASDIKSEFEINERFIERSIWGGRSGRPRPPTEFPGFEDYCETTSVDDNY
TVSTRIGSIERVDEPQTVYDIGVSHNAHNFVANGFVVSNCGVRMMRTNLTYDDVQGREEE
LVDSLFANVPSGLGGGGIVEAGVDTVEEILARGVDWALENGHAVEDDLLHCEDEGMREGA
DPDKVSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDGEVGEAYGLSEDQIVVLIHCGSR
GLGHQTCNDYLRKIEQQHEGLLNQLPDTELAAAPAGSQLAEDYYAAMNAAINFAWVNRQL
IMHRTRQVFERVFDRSWEEMDMHLLYDVAHNIAKKETHTVGEDGEERELYVHRKGATRAF
PAGHPEVPSAYRDVGQPVIIPGSMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKD
EFWGGDVQQDLEEQSQIYVKAQSGATVAEEAPGVYKDVDEVVRVSDALGIGDKVARTFPV
CNIKG
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgactacctacgacgcgaacggcatcacgttagagcgggtgcgcgagtacgtctgggag
atcccacgagagggtgacatgcgcgtcccggcgcgagtgttggccagcgaggccctgctc
gaacagatcgaggacgacaagacactcgagcagatcaaaaacacgacccacctgccgggg
atcaccgaccacgcgatctgtatgcccgacggccatcagggctatggcttccccgtcggt
ggggtgggtgcgctcgacgccgagaacggctgtatttcgccgggagcggtcggctacgac
atcaattgccttacaggcgattcggaagtactcctcgaatacggccgtcgcaccccgatc
gaaactctcgaggaccgcttcgaagcggagaacgcgatggtcgtggataatgacctcaca
ccgtctccgattcggctgtttaccgaacgcgagaacgcggctgtgtacgaagtagagacc
gaaaccggcgatcagatcactgcgaccgcggatcaccccttccgaacgcctgacgggatg
cgaccgctcgagaaactctccgagggcgacgaggtccacatccaaccgttccacggcgtt
cccgacgaggaacccgatgagttcaccgtcctcagcaaggatgacttcgcggacgagaat
ccacaactcgtccgcgcgctcgagaagcgggatctccttccgctgcagtcgaccgacgac
gcgttcaaccgattcctcaaactcgtcgggttccatactggcgacggtgcgatcggaagc
ggcggacagacatggttctacggagaacccgaagacctcgaatctatccggaacgatatc
gaagcgattggatttaccccttcgaaaatttacgagcgagatcgatcgcacgagatcgac
ggaaaaacgttcgagacgacggagtacagtgttcgatcgacttcgaaggcgttccagaaa
atgctgctcgcactgggggctcctgacggacgcaagatcgagtcggacttcacgacgccg
tggtacttcgctcgactgacgaactggcagaaagcgctgtacgtctcggcgtatttcgga
gccgaaatgaacgctcccgcggcccagcacgacaagaacctgtactgtccgaaggtgtca
cagacgcgtgtcgccgacgttgcggacgccggtgagaaattcatgggggaactggcttcc
ttcctcgacgatctcggtatcgaaacgaacgagatcgaacggttcgaaacggactcgagc
gcggatcgagagacgatcagacttcggctcggtatcaaaaacgattccgagaacctcatt
acgttcttttcgaccgttggctaccgctataatcatgaaaagcgacaaaaagctgccaaa
gcagtccagtatctcaagacaaaagaggccgtgatcgatcgtcgagcgacgatcgcccgc
gaagcgaaagcgatggccgacggtggaacgccagcgagcgacatcaaatcggaattcgag
atcaacgagcggttcatcgaacggagtatctggggtgggcgaagcggacggccacgacca
ccgacggaattccccggattcgaggactactgtgaaacgacgagcgtcgatgacaattac
accgtatcaacccgaatcggatccatcgagagagtcgatgaaccgcaaacggtgtacgat
atcggcgtctcccacaatgcgcataatttcgtcgctaacgggtttgtcgtctctaattgc
ggtgtccggatgatgcggacgaacctcacctacgacgacgtacagggccgcgaggaggaa
ctcgtcgactccctcttcgcgaacgtcccgtcgggcctgggcggcggcggcatcgtcgag
gccggcgtcgacaccgttgaggagatcctggcccgcggcgtcgactgggcgctcgagaac
ggccacgccgtcgaggacgacttactgcactgcgaggacgagggcatgcgcgagggcgcg
gacccggacaaggtgagccagaaggccaaggaccgcgggaagaaccagatcggctcgctg
ggctcgggcaaccacttcctcgaggtccagcgcgtgaccgacgtgttcgacggcgaggtg
ggcgaggcctacggcctctccgaggaccagatcgtcgtcctcatccactgcgggtcgcgg
ggactgggccaccagacctgtaacgactacctgcggaagatcgagcagcaacacgaggga
ctgctgaaccagctgccggataccgaactggcggccgcgcccgccggctcgcaactggcc
gaggactactacgcggcgatgaacgccgccatcaacttcgcgtgggtcaaccgccagctg
atcatgcaccgcacgcggcaggtcttcgagcgcgtgttcgatcgctcctgggaggagatg
gacatgcacctgctgtacgacgtggctcacaacatcgcgaagaaagagacccacacggtc
ggcgaggacggcgaggaacgggaactctacgtccaccgcaagggcgcgacgcgggcgttc
cccgcgggccaccccgaagtcccctcggcctaccgtgacgtcggccagccggtgatcatc
cccggcagcatgggcgcgggcagctacgtcctccgcggcggcgagaattccatggacctc
acgtttggctcgaccgcccacggcgcaggtcggttgatgagccgcacgcaggccaaagac
gagttctggggcggcgatgtccaacaggacctcgaggaacagagccagatctacgtcaag
gctcagtcgggcgcgacggtcgccgaggaggccccgggcgtctacaaggacgtcgacgag
gtcgtccgcgtctcggacgcgctcgggatcggcgacaaggtcgcgcggacgttccccgtc
tgtaacatcaagggctga
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