Ornithinimicrobium ciconiae: FNH13_12730
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Entry
FNH13_12730 CDS
T06094
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
orz
Ornithinimicrobium ciconiae
Pathway
orz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
orz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FNH13_12730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
orz03019
]
FNH13_12730
03009 Ribosome biogenesis [BR:
orz03009
]
FNH13_12730
Enzymes [BR:
orz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FNH13_12730
Messenger RNA biogenesis [BR:
orz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FNH13_12730
Ribosome biogenesis [BR:
orz03009
]
Prokaryotic type
rRNA processing factors
FNH13_12730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
HC2
Motif
Other DBs
NCBI-ProteinID:
QDO90397
UniProt:
A0A516GFU4
LinkDB
All DBs
Position
complement(2763725..2767318)
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AA seq
1197 aa
AA seq
DB search
MDQQPDTPSEATETPSQSNDSASSLGGLFSHDQSGQPVTAPTKKAPAKRARKSAAKTVDP
AAADQAVGAAQDAAQEAGVEGATEEAAAESATAKKTTARKAPAKKATATKAAAKKTTATK
ATVKKTTATKATVKKASATKATTKKATPGETTSETAAKALSAGDDEAAAETADAALDTQG
TDAATPAVGGADPAQDAPTDDPADAADAKDGDEEPETAAAASPFGLLFQAPDLSAVPARQ
PRSRRAEPTQADAPSATAPEADSTDSATDASGATPAPTGSPRGRGTRRGGQSETQGRGQS
TQGGTQQGGPQQGGPQQGETQQGGAQQGSVQQGGAQQGPDDSDSDGRGADRGPQGGWQGE
DDSDDSESANARRRRRRGGKGRRGRGGSLDDSGEGQDEQTETTGEADDTSGETTVPGEGT
SSNVRRRRRSNRRGEDTEAGESRRAREEVTGVRGSTRLEAKRQRRREGREAGRRRSIITE
AEFLARRESVERTMVVRGLKDRTQIGVLEDGVLVEHYVSRETQTTAVGNVYLGRVQNVLP
SMEAAFVDIGKGRNAVLYAGEVNWDAAGLDNNQPKRIENALKSGDSVLVQVTKDPIGHKG
ARLTSQVSLPGRYLVLVPGNSMTGISRKLPDTERARLKKILKEVVPEGAGVIVRTAAEGA
SEEELRADVERLTGMWQRIESKQKSANAPALVHGEPDMTVRVIRDVFNEDFAKVIVSGEQ
AWTEVSDYISSVAPDLAERLEKWTGTQDVFTHYRVTEALSKAMDRKVWLPSGGSLVIDRT
EAMTVVDVNTGKFVGSGGNLEETVTKNNIEAAEEIVRQLRLRDIGGIIVIDFIDMVLESN
RDLVVRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGAGLIEVFSEPCVHCSGRGIVVH
SEPIEKSDGGGHHASSSSGGGRRGRGRTGTSGNDSAAPSRPTPAPGGPTPAQIAAAAHAA
AVASSAQASAKVADDPVADSAAVAGTSAAADGTPESTDAPKSTGTRKSTGTPRRSGGATV
WRPPSAATPADSPELSTSAADPSVDSSGAAPAAAPSPVATTPDPAASSEPPAPRVRGARR
ASRRAQSAPKAPPAAETAAAPAPQTRVAGTTGGDAAPVVTAGTGRPEAVHVDADTGPAQE
SPAAPTQAPTRRRGRGRVVAPAGPPTGAPTDATGSPDGQTPGTSAGSPGESGPESSH
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggaccagcagcccgacacgccctcggaagcaaccgagacaccctcacagtccaacgac
tcagccagttccttgggagggctcttctcacacgaccagagcggtcagcccgtgacggcc
ccgaccaagaaggcgccggccaagcgcgcgcgcaagtcggccgcgaagacggtcgatccg
gccgccgctgaccaggctgtcggcgctgcacaggacgctgcgcaggaggcgggagtcgag
ggcgccaccgaggaggccgctgccgagtcggccactgcgaagaagaccaccgcgaggaag
gcgcctgcgaagaaggcgactgccacgaaggccgccgcgaagaagacgactgccacgaag
gcgaccgtgaagaagacgactgccacgaaggcgaccgtgaagaaggcgtctgccacgaag
gcgaccacgaagaaggcgaccccgggggagacgacctcagagacggctgcaaaggccctc
tccgcaggggacgacgaagctgccgcagaaactgcggacgccgctctcgacacgcagggg
accgacgcggctacgcctgcggtcggtggagccgacccggcccaggacgccccaacggat
gaccctgccgacgccgcagacgcgaaggatggcgacgaggagccggagactgcggctgcg
gcctcacccttcgggttgctgttccaggcccccgacctctcggcggtgccagctcgccag
cctcgcagccgtcgtgctgagcccactcaggccgacgcgcccagcgcgacagcaccggag
gccgactccaccgactcggccactgacgcatcaggtgcgacccccgcaccgaccggatcc
ccgcgggggcgtgggacccgccggggcggccagagcgagacccagggccgcggccagtcg
acgcagggcgggactcagcagggcggtcctcagcagggcggtcctcagcaaggcgagact
cagcagggcggtgcacagcaaggcagcgttcagcagggcggggctcagcagggaccggac
gactccgacagtgacggtcgcggtgctgaccgcggcccccagggtgggtggcagggcgag
gacgacagcgacgactccgagagcgccaacgcccggcgccgtcgccgccgcggcgggaag
ggccgccgcgggcgtggcggcagcctcgacgacagcggcgagggccaggacgagcagacc
gagaccaccggcgaggcggacgacaccagcggcgagaccaccgtgccgggggagggcacc
tcgagcaacgtccgtcgccgtcggcgcagcaaccgccgcggagaggacaccgaggccggt
gagtcccggcgcgcacgcgaggaggtcaccggggtgcgtggctcgacccgcctcgaggcc
aagcgccagcgccgccgtgagggccgggaggcaggtcgtcgccgctcgatcatcaccgag
gccgagttcctggcgcgccgcgagagcgtcgagcgcaccatggtggtccgcgggctcaag
gaccgcacgcagatcggcgtcctggaggacggtgtgctggtcgagcactacgtctcgcgc
gagacccagaccaccgctgtcggcaacgtctatctcggccgtgtccagaacgtcctgccc
agcatggaggccgcgttcgtcgacatcggcaagggccgcaacgcggtgctgtatgccggc
gaggtcaactgggacgcagccggcctggacaacaaccagcccaagcgcatcgagaatgcc
ctcaagtccggggactcggtcctggtgcaggtcaccaaggaccccatcggtcacaagggc
gcccggctgacctcgcaggtctccctgccggggcgttatctggtgctcgtgccgggcaac
tcgatgaccggtatctcacgcaagctgcccgacaccgagcgtgcccgcctgaagaagatc
ctcaaggaggtcgtgcccgagggggctggcgtgatcgtgcgcaccgcggccgagggggcc
agtgaggaggagctgcgcgctgacgtcgagcggctgaccggcatgtggcagcgcatcgag
tccaagcagaagagcgcgaatgcccccgcgctggtgcacggtgagccggacatgaccgtc
cgggtcatccgcgacgttttcaacgaggacttcgccaaggtcatcgtctccggagagcag
gcctggaccgaggtcagcgactacatcagctccgtggccccggacctggctgagcggctg
gagaagtggaccggcacccaggacgtgttcacccactaccgcgtcaccgaggcgctgtcg
aaggcgatggaccgcaaggtgtggctgccctcgggcggctcgctggtcatcgaccgcacc
gaggccatgacggtcgtggacgtcaacaccggcaagttcgtcggctcgggtggcaacctc
gaggagacggtcaccaagaacaacatcgaggcggccgaggagatcgtccgccagctgcgg
ctgcgcgacatcggcggcatcatcgtcatcgacttcatcgacatggtgctggagagcaac
cgtgacctcgtcgtccgacggctgctggagtgcctggggcgcgaccgcaccaagcaccag
gttgctgaggtgacgtcgctgggcctggtccagatgacgcgcaagcgtgtcggtgcgggc
ctgatcgaggtcttctcggagccctgtgtgcactgcagcgggcgcggcatcgtcgtccac
tctgagccgatcgagaagtctgacggcgggggacaccacgccagctcctcctctggtgga
ggcaggcggggtcgcgggcgcacaggtacctcgggcaacgacagcgcggcgccgagccgc
cccactccggcaccgggtggtcccaccccggcccagatcgctgcggcggcgcacgcggca
gcggtcgcgagctcggcccaggccagcgccaaggtggctgacgacccggtcgcagactcc
gcggctgtcgctggcacatcggcagccgctgatgggacgccggagagcaccgacgcgccg
aagagcaccggcacacgcaagagcaccggcacgcctcgtcgctccggtggcgcgaccgtg
tggcgtccgccgagcgcagcgacccccgctgactcgccggagctctcgacgagtgcggca
gatccctccgtcgactcttccggcgccgcacctgcagcggcaccatctccggtggcgacg
acgccggacccggcggccagcagcgagccacctgccccgcgtgtgcggggtgcccgccga
gcgtcgcgacgtgcccagtcagcgccgaaggctccgcccgccgcggagacggctgccgca
cccgcgccccagacccgcgtggcggggacgaccggcggcgacgcggcacctgtcgtcacc
gcaggcaccggccggccggaggcggtccacgtcgacgctgacacgggcccggcacaggag
tctccggcagcaccgacccaggctccgacgcggcgtcgcggccgcggtcgggtggtcgct
ccggcaggtccgccgaccggcgctccgaccgacgccacaggttctcccgacggacagaca
ccgggcaccagcgccggctcgccgggcgagtccggacccgagagcagccactga
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