Syntrophotalea carbinolica: Pcar_2039
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Entry
Pcar_2039 CDS
T00285
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pca
Syntrophotalea carbinolica
Pathway
pca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pcar_2039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pca03019
]
Pcar_2039
03009 Ribosome biogenesis [BR:
pca03009
]
Pcar_2039
Enzymes [BR:
pca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Pcar_2039
Messenger RNA biogenesis [BR:
pca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pcar_2039
Ribosome biogenesis [BR:
pca03009
]
Prokaryotic type
rRNA processing factors
Pcar_2039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABA89280
UniProt:
Q3A2X7
LinkDB
All DBs
Position
2370354..2373134
Genome browser
AA seq
926 aa
AA seq
DB search
MTKKMLINATHPEEHRVAIVEDGILSELDIEISGKEQTKGNIYKAVVARVETGLQAAFVD
YGSERLGFLQIGEIHPAFFKEAEGRVEAGKRPRINDILRRGQEILVQIVKEERGTKGAAL
TTYLSLPGRYMVLMPDSDTKGISRKIEKESDRKKLRELMDSLEIPEEMGYIVRTAGSTQK
RTDLKRDVDYLLRLFNKIQSLSDSTKAPSLIYKESNLVIRSIRDYFSDDMDEVLVDDAKV
STEARDFFQEVMPEYAELVKLHQERRPIFARYQIEDQIESIGKNKVMLPSGGSIVIDSTE
ALVAIDVNSGKMASEQGVEATAYKTNLEAAVETARQLRLRDLGGLVVIDFIDMRDRKHIR
DIEKTLKEAMKTDKARVTIGRISQFGLLEMSRQRIKSALAAASFEVCPHCNGSGKIKTIE
AQSLGFLRRIHTGLAKGRIGRVEATVPLDVASYLLNNKRVELMAIEQKNDVSIHIKGCPD
YMNGQGEIDFHKREKEETQATAYIEASQVMSETNNAQQDSTTDTEEKPAKRRRRPRRRRK
SSAATPVSEPSTLTTESEEQQPAATQDAAESQPMATDTEVAREVSEKTAEPVSTEATEPA
EKTAEPASAAEEQPQKPSRPRSRSGRRKPATKKTEAKPEAKPEAKPEAKPEAKPEAKPEA
KPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEA
KPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPKAKPKVESEAQSEAMPEAKPKT
TRRAPSRSRTKTKTKTETAESNTSATGTETDTPSEKDEKPAETKPPAKRARARRTTKPTA
KTATQASDDVSPAEKDETAKATETAAPKRRTRARKTTAKTVKSGDDASSVSASNAEEAEK
KKPTRRPRKPAAKAVEESKKAETSED
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaaaatgctcatcaatgccacccatccggaggagcatcgggttgctattgtc
gaagacggaattctgtcagaactcgatatcgaaatttccggcaaggagcaaaccaaaggc
aatatttacaaggccgttgtagcccgcgtcgaaacgggattgcaagcggcctttgtcgat
tatggaagcgaacgtctcgggtttcttcagatcggcgaaatacacccggcttttttcaag
gaagccgaaggacgggtggaggccggcaaacgcccacgcatcaacgatatcctgcggcgc
ggccaggaaatcctggtacagatcgttaaagaggaacgcggcaccaagggagccgccctg
acgacctacctttcgctacccggccgttacatggtcctgatgcccgattcggacaccaaa
ggcatatcgcgcaaaatcgaaaaagaatccgaccgcaaaaagctcagggaactcatggac
agcctcgagatccccgaggaaatgggctacattgtccgaaccgccggcagcacgcagaaa
agaaccgacctcaaacgcgatgtcgactatctgctgcgccttttcaataaaatccaatcc
ctttccgacagcaccaaggcaccgtccctgatctataaggaatccaatctggtcattcgc
tccattcgcgactatttcagcgacgatatggatgaagtgctggtagacgacgccaaggtc
tccaccgaagcacgggacttcttccaggaagtgatgcccgaatatgccgaactggtaaaa
ctgcaccaggagcggcggccgattttcgcccgctaccagatcgaagatcagatcgaatcc
atcggtaaaaacaaagtcatgctcccttccggcgggtccatagtcatcgactccaccgaa
gcgttggtggccatcgatgtcaactccggcaaaatggccagcgagcaaggcgtggaagcc
acggcctacaagaccaaccttgaggccgcggtcgaaaccgcccggcaattgcgactacgc
gacctaggcgggctggttgttatcgacttcatcgatatgcgtgaccgaaagcatatacgc
gatattgaaaaaaccctcaaagaggccatgaaaaccgataaggccagagtcactatcggg
cgcatcagccaattcggcctgctggaaatgagtcgccaacgcatcaagtccgcccttgcc
gccgcctccttcgaggtctgcccgcattgcaatggcagcggcaaaatcaagacgatagaa
gcccagtccctgggatttttgcgccgcattcacaccggcctcgcaaaaggccgtatcgga
cgggtggaagccacggtgcccctggatgtcgccagctatctgctcaataacaaacgcgtc
gaattgatggctatcgagcagaaaaacgacgtcagcattcacatcaaaggctgcccggat
tacatgaacggccaaggcgaaatcgacttccataaacgggagaaggaagagacccaggcc
accgcctatattgaagccagccaggtcatgtccgaaaccaacaatgcgcagcaggattcc
actacggacaccgaggaaaaacctgcgaaacgcagacgccgcccccgcagacgacgcaaa
tcgtctgccgcaactcccgtatcggagccctctaccctgacaacagaatcagaggagcaa
caaccggctgcaacccaggacgctgcagaatcgcaaccgatggcaacagatacggaagtc
gctcgggaagtcagcgaaaaaaccgctgaaccggtatcaaccgaagcgacagagcccgct
gaaaaaacagccgagccggcatcggccgcggaggagcaaccgcagaaaccgtcccgaccg
cgcagccgctccggccgccgcaaacccgctacaaaaaaaaccgaggccaaacctgaggcc
aaacctgaggccaaacctgaggccaaaccggaagccaaaccggaagccaaaccggaagcc
aaaccggaagccaaaccggaagccaaaccggaagccaaaccggaagccaagccggaagcc
aaaccggaagccaaaccggaagccaaaccggaagccaagccggaagccaagccggaagcc
aagccggaagccaagccggaagccaagccggaagccaagccggaagccaagccggaagcc
aaaccggaagccaagccggaagccaagccggaagccaagccggaagccaagccggaagcc
aagccggaagccaagccggaagccaagccggaagccaagccggaagccaagccgaaagcc
aaaccgaaggtcgagtcggaagcccagtcagaggctatgccggaagccaagccgaaaaca
acccggcgcgctccgagcagaagtcggaccaaaaccaaaacaaaaaccgaaactgcggaa
agcaacacttcggcgacgggtaccgagacggacacaccttctgaaaaggatgaaaaaccc
gcggaaaccaagccgcctgcaaagcgtgcccgagcacggcgtaccaccaaaccgacggca
aaaacagcgacacaggccagcgatgatgtttcgcccgctgaaaaggatgaaaccgccaaa
gcaactgaaactgccgcaccgaaacgtcggacaagggccagaaaaacaacagccaaaacc
gtaaaatccggcgacgacgccagctccgtatctgccagcaatgcggaggaagctgaaaag
aaaaaaccgacccgccggccccgtaagccggcagcgaaagcggttgaagaatccaaaaag
gctgaaacgtccgaggattaa
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