Stutzerimonas chloritidismutans: LLJ08_07435
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Entry
LLJ08_07435 CDS
T07923
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pchl
Stutzerimonas chloritidismutans
Pathway
pchl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLJ08_07435 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchl03019
]
LLJ08_07435 (rne)
03009 Ribosome biogenesis [BR:
pchl03009
]
LLJ08_07435 (rne)
Enzymes [BR:
pchl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LLJ08_07435 (rne)
Messenger RNA biogenesis [BR:
pchl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LLJ08_07435 (rne)
Ribosome biogenesis [BR:
pchl03009
]
Prokaryotic type
rRNA processing factors
LLJ08_07435 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
UEG62956
LinkDB
All DBs
Position
complement(1589802..1592936)
Genome browser
AA seq
1044 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFSKSPEGRVNIKDVLREGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLDIPADMGLIVRTAGLGRSSEELQC
DLDYLLQLWTAVKDASQDRPAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALS
FIQQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKM
REALEADRARIQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHF
EVQRLRDDSPEIMAGQASYEMSPTEAEEAQPVSSTRTLVRQEAAVKTAPQRTAPAAAAAA
PAETPVAAPVQEPSLFKGLIKSLVGLFAGETKEPQATAEVEKKPASPRPQRNDERRSGRQ
QNRRRDSRGGRDEERKPREERQPREERQAREERQPREERQPRPPREERKPREQAEVAESQ
PRRERAPREDRKPREERKRELRAPIDEAPIAVAAEEEQAERQPRAPREERKPRAERQAPV
AADELLQQTEDANEAEDAQDSNEGSEGNDGDRPRRRSRGQRRRSNRRERQRDANGNEIDE
VDESNAPVKTEEIAVAATAAALAANTADTEAAPQAKLADDAVIQTSTEGVATIVEHAPSV
ESTDEQRTVAEQSIAIEAADETSTHAAEVAPSEAPQVVQADATPQPAPEPVAEKVEVAPA
VAPVLTPSGRAPNDPREVRRRQREAERLAKEAAEADSKAAAEQPLASPEIVASEPVVEAQ
VEQVAEPVPADAQPEQFAEPVTTLHEQPLAEADEPAEQAQVSTAEVDEQKPEAPTTEEVV
QPSPLESEQAVEGDQPDNREKPQG
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcaactcagcccgaagagttgcgtgtcgcactggtcgac
ggccaacgtctgttcgatctggacatcgaatcaggtgcccgcgagcagaagaaagccaac
atctacaagggcaagatcacccgcgtcgagcccagtctcgaagctgctttcgtcgacttc
ggcgccgagcgccatggcttcctccccctcaaggaaatttctcgcgaatacttcagcaag
tcgcctgaaggccgcgtgaacatcaaggacgtcctgcgcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagagcgcggcaacaaaggcgctgcactgaccaccttcatcagtctg
gccggccgttatctggtcctgatgccgaacaatccgcgtgctggtggcatttcgcgccgc
atcgaaggtgaagaacgcaatgaattgcgtgaagccctgaacggtctcgatatccccgct
gacatgggtctgatcgtccgcacggcaggcctgggccgctccagcgaagagctgcagtgc
gacctcgactatctgttgcagctctggaccgcagtcaaggatgcgtcccaggatcgcccc
gcgccatttctgatctatcaggaatccaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagtgtcgaagcacaggacgaggcattgagc
ttcatccagcaggtgatgccgcagtacgccagcaagatcaagctgtacgaagattccgta
ccgctgttcaaccgcttccagatcgaaagccagatcgagacggccttccagcgtgaagta
aaactgccttccggcggctctatcgtcatcgatccgaccgaagcattggtatccatcgac
atcaactcggctcgcgccaccaagggtggcgacatcgaagaaaccgccctgcagaccaat
ctggaggcggccgaggaaatcgcccgccagctgcgtttgcgcgacatcggcggactaatc
gtcatcgacttcatcgacatgaccccggctaagaaccagcgcgccgtcgaggagaagatg
cgcgaagcactggaagccgaccgtgcacgtatccaggtcggccgcatctcgcgcttcggc
ttgctggaaatgtcccgccagcgtctacgcccctctctgggcgagaccagcggcatcgtc
tgcccacgctgcaacggccaaggcatcattcgtgacgtcgaatcgctgtcgctggcgatt
ctgcgcctgatcgaagaagaagccctcaaggaccgcaccgccgaagttcgcgctcgcgtg
ccgttccaggttgcagcgttcctgctcaacgagaaacgcaacgcgatcaccaagatcgag
ctgcgcacccgtgcgcgcatcttcatcctgccggacgatcacctggaaacgccgcacttc
gaagttcagcgactgcgtgacgacagcccagaaatcatggcaggccaagccagctacgaa
atgagcccgaccgaggccgaagaagctcagccggtcagctccacacgcaccctggttcgc
caggaagcggcggtcaagaccgcaccgcagcgcaccgcaccggcggcagccgccgcagcg
ccagccgaaacacccgttgccgcgccggtgcaggaaccaagtctgttcaagggcctgatc
aaatccttggtcggactgttcgcaggcgagacgaaagaaccgcaggccacagccgaagtc
gagaagaagcccgcctcgccgcgcccgcagcgcaatgacgagcgccgcagcggacgccag
cagaaccgtcgccgcgattcgcgcggtggccgtgatgaggagcgcaagccgcgcgaagaa
cgtcagccccgtgaggagcgccaagctcgcgaagagcgccagccccgcgaagagcgccag
ccgcgcccaccacgcgaggaacgcaaaccccgtgaacaggccgaagttgccgaaagccag
ccgcgccgcgagcgagccccacgcgaggaccgcaagccccgcgaggagcgcaagcgcgaa
ctgcgagcaccaatcgacgaagctccgatcgctgtagcagcagaagaagagcaggccgag
cggcaaccacgcgccccgcgcgaagagcgcaagccgcgcgccgaacggcaagccccggta
gccgccgatgagctgctgcagcaaaccgaggatgcgaacgaagccgaggacgcccaggac
tccaacgagggcagcgaaggcaacgacggcgaccgcccacgccgccgctcccgcggccag
cgtcgtcgcagcaatcgccgtgagcgtcagcgtgacgccaacggtaacgaaatcgacgag
gtcgacgagagcaacgccccggtgaaaaccgaggaaatcgccgtcgcagcaacagccgcc
gccctggccgcgaacaccgccgacaccgaagcggctccacaggccaagctcgctgatgac
gccgtgattcaaaccagcaccgaaggtgtagcgacgattgtcgagcatgcgccaagcgtg
gaaagtacggacgagcagcgcactgtggccgagcagtcgatagctatcgaagctgcagac
gagacatcgacacacgctgccgaagttgcgccgagcgaagcaccacaggtcgtccaagcc
gacgccaccccgcagcctgccccggagccggtggccgagaaagtcgaagtcgcaccggcc
gtggcgccagtactgacgcctagcggacgcgcgcctaatgatccgcgcgaggtccgtcgc
cgtcagcgtgaagccgagcgtctggccaaggaagcggcagaagccgactccaaggccgca
gcggagcaacctctggccagcccggagatcgtcgccagcgagccagtcgtcgaagcgcaa
gttgaacaagttgcggaaccagtgcctgccgacgcccagcctgagcagttcgccgagcca
gtcaccaccctccacgagcagccgctcgccgaggccgacgagcccgccgaacaagcacag
gtgtcgaccgctgaagtagacgagcagaagccagaagcaccgacaactgaggaagtggtt
cagccatcacccctagagtcggaacaagctgtagaaggtgaccagccagataaccgtgag
aagccgcaaggctaa
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integrated database retrieval system