Pectobacterium carotovorum subsp. carotovorum PC1: PC1_2511
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Entry
PC1_2511 CDS
T00934
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Pathway
pct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PC1_2511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pct03019
]
PC1_2511
03009 Ribosome biogenesis [BR:
pct03009
]
PC1_2511
Enzymes [BR:
pct01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PC1_2511
Messenger RNA biogenesis [BR:
pct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PC1_2511
Ribosome biogenesis [BR:
pct03009
]
Prokaryotic type
rRNA processing factors
PC1_2511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ACT13542
UniProt:
C6DKU1
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All DBs
Position
2877152..2880493
Genome browser
AA seq
1113 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYASHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLQLPDGMGLIVRTAGVGKSAEAL
QWDLAFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KEHISALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDSVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVQIASYLLNEKRDAVNAIEKRQGGVRAVIVPHDGMQ
TPHYSVVRVRKGEEKPTLSYLLPQRLETETQQQQDEQTIERKQPEQPALATFTMAEMPAE
TAPSVAKATPAAAKPAETAQPGLISRFFSALKSAFASEPAVKAADSVDEKKAEEEKSADG
QRSERRNSRRQGNNRRDRNSRDDRGSRDNREQRDEQRRNKRQNEEVVAENAEKTSSEEQP
RREPRAERQRRRQDERRQASSNEAKAQPAIDDSDDNATEQDKPTQVMPRRQRRQLSQKVR
VQSDTQQDTLSDSTVPVAVPSEQAQSYVKSNEAAVDNNEVDSEQNDANRANAENGGMPRR
SRRSPRHLRVSGQRRRRYRDERYPSQSPMQLEFAAASPEMASGKVWISYPLAQTQQAEGQ
PQDENVAAIETPLLPTVVETAVTTQIDTAESNLAENVAIAEVAIQEDAVVTATAQSADVI
QDSNVANVEVSAADEKTVVEPVTENTAIDDAIAAVAVSAVEEAKVADTALAAEDVQIVEP
VAAETVIAETLATDDVATEASAEDKQTDSIADATEKADVAEPVSTPAVSAVQETIPPQRA
QDEPATAASAQPIVEEPVSSVAKAATVAEQPRYKFHATAPMTKAPAPAYHAEPARQSDWV
RPAYPFSGKGSAGGHAAVNQSTAPATKPTPVSE
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaagagttgcgtgttgccttggttgat
ggtcaacggctgtatgatttggatatcgaaagtccgggtcatgagcagaagaaagcaaat
atctacaaaggtaaaatcactcgtatcgaacccagtcttgaagcggcttttgttgattac
ggcgcagaaagacatggtttcctccctcttaaagaaatcgcccgcgaatatttccccagc
aactatgcttcccatggtcgtcctaacattaaagacgtgttacgtgaaggtcaggaagtc
attgttcaggtagacaaagaagagcgtggcaacaaaggcgcagcgctgactacctttatc
agcctggcgggtagctatctggtcttaatgccgaataatccgcgcgccggtggaatctcc
cgtcgcatcgaaggtgacgatcgcaccgagctcaaagaagcgctgggttcgctgcaactg
cctgatggcatgggtctcattgttcgtactgctggtgtgggtaaatccgctgaagccctg
caatgggatctggctttccgtctgaaacactgggacgcgatcaaaaaagccgccgaaggc
cgccctgcaccgttcctgattcatcaggaaagtaacgtgattgtccgcgctttccgtgac
tatctgcgcccggacattggcgaaattctgattgataaccccaaaattctcgatctggcg
aaagaacacatttctgcgctgggtcgtcctgatttcagcagcaaaatcaaactatacagt
ggtgaaatcccgcttttcagccactatcagattgaatcgcagatcgaatcggctttccag
cgtgaggttcgcctgccgtccggcggttctatcgttatcgataccaccgaagcgctgacg
gcgattgatatcaactctgcccgtgcaacgcgcggtggcgatatcgaagaaaccgcgttt
aataccaaccttgaagccgcagacgaaattgcccgccaattgcgcctgcgtgacctcggc
ggcctgatcgttatcgactttattgatatgactccggttcgccaccagcgtgaagtagaa
aaccgcctgcgagattccgtacgtcaggatcgtgcacgtatccagattggccgcatttcc
cgcttcggtctgttggaaatgtcgcgtcagcgtctgagtccgtcactgggtgaatccagc
catcacgtctgcccacgttgtagcggtacaggtacgattcgtgacaatgaatcactttct
ctgtctattcttcgcctgattgaagaagaagcgctgaaagaaaacaccaaagaagtccac
gcgattgttccagtccagattgcttcttatctgctgaacgagaagcgtgatgccgttaac
gccattgagaaacgtcaaggcggcgtgcgtgcagtcatcgtgccacacgatggcatgcaa
acacctcactactccgttgtccgcgtccgtaaaggcgaagaaaagccaacgctcagctat
ctgctgcctcagcgtttggaaacggaaacacagcaacagcaagacgaacagacgattgaa
cgtaaacagcctgagcaacctgctttagcgacgtttaccatggcagaaatgccagcggaa
accgcaccgtcggtagccaaagcgacacctgctgcggcaaaacctgcggaaaccgctcag
ccaggcctcatcagccgtttcttcagcgccttaaaaagcgcctttgcttctgaacctgcg
gtaaaagcagcggatagcgttgacgagaagaaggcagaagaagagaaatcggctgacggt
cagcgttctgagcgtcggaattctcgtcgtcagggcaataaccgccgcgatcgcaattct
cgtgacgatcgtggttctcgtgacaatcgtgaacagcgtgatgagcagcgccgtaataag
cgacagaacgaggaagtggttgcggaaaacgcggagaaaaccagttcagaagaacagcct
cgccgtgaaccgcgtgctgagcgccagcgtcgtcgtcaggatgagcgccgtcaagcttct
tctaacgaagcaaaagcgcagccagcgattgatgattctgatgacaacgccaccgagcag
gataaaccgactcaggttatgccacgtcgtcaacgccgtcagttgtcgcagaaagtacgt
gttcagtctgacactcagcaggataccctctccgatagcacagtacctgtcgctgttcca
tctgagcaggctcaatcctatgtcaagtcgaacgaggctgcggtagacaacaacgaggtc
gatagcgagcaaaacgacgcaaatcgtgccaacgccgagaatgggggaatgccacgtcgt
tcacgccgttcgccgcgtcacctgcgcgtcagcggccagcgccgtcgtcgttatcgtgat
gagcgctacccgtctcaatctccgatgcagttggaatttgccgccgcatcaccggaaatg
gcatcaggaaaagtgtggattagctatcctcttgcccagacacagcaggctgaaggccaa
ccgcaggacgagaacgttgcggcgattgaaacaccgctgttgccaaccgtcgtcgaaact
gcagtgactacgcaaatcgataccgcagaatccaacctagctgaaaatgtggcgattgct
gaagtcgcgattcaggaagacgctgttgtcaccgcaacagcacaatctgccgacgtgatt
caggatagcaatgtcgcaaatgtcgaggtgagtgccgcagacgaaaaaaccgtcgtcgag
cccgttaccgagaacaccgctatcgacgatgctatcgctgcggttgccgtaagtgccgtt
gaggaagcaaaggttgctgatacggctctggctgctgaagacgtacagatcgttgaacct
gttgcggctgaaactgtaattgctgaaactttagctactgacgatgtcgctacggaagca
tccgcagaagacaagcagacggatagcattgctgatgcaaccgagaaagctgatgtggca
gaacccgtttctactccggcagtttccgcagtacaggaaactatcccgccacagcgcgct
caggatgaacctgccaccgcggccagcgcacagccgatagtggaagaacctgtatcgagc
gtagcaaaagcagcaaccgttgctgagcaaccacgctataagttccatgcgacagcgccg
atgaccaaggctcctgcgccggcataccacgcggaaccagctcgacagagtgattgggtt
cgtcctgcctatccgttctcaggaaaaggttcggcaggcggtcatgcggcagttaaccag
tcaactgcgccagcaaccaagcctacacctgtcagcgaataa
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