Pseudomonas protegens Pf-5: PFL_1787
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Entry
PFL_1787 CDS
T00249
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFL_1787 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfl03019
]
PFL_1787 (rne)
03009 Ribosome biogenesis [BR:
pfl03009
]
PFL_1787 (rne)
Enzymes [BR:
pfl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PFL_1787 (rne)
Messenger RNA biogenesis [BR:
pfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PFL_1787 (rne)
Ribosome biogenesis [BR:
pfl03009
]
Prokaryotic type
rRNA processing factors
PFL_1787 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AAY91076
UniProt:
Q4KFS6
LinkDB
All DBs
Position
complement(1988641..1991856)
Genome browser
AA seq
1071 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEANTNQSSYEIAAAAAEAEEVQPTAATRTLVRQEAAVKTAPARANAPVPT
EVVAAPVAAPAPVAEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPVTERPARSNEEQRRN
GRQQSRNRNGRRDEERKPREERAPREERAPREERQPREVREAREEVQAVAREERAPRAPR
EERQPRAPREERKPRGEREERVRELREPLDAAPAAAAATAAVVAEERPARQPREERQPRA
PREERQPRAEQAQAAAASEEEALPNEEQLQEDGQDNAEGERPRRRSRGQRRRSNRRERQR
DANGNVIEGSEENAEEPSSADLAAGLAVTAAVASTAISANAEAEAHQQAERATAAVEDKA
PEAPVVEATTPVEAPVVPAVEVAPVAEEQAQVEVAAEPAVVVEAQPVVAEQPAAEPVAQA
PVVEEKAIEPVQEAPAPAPVAEPALVVEEPVAAQQPAQVEEPAPVAAPVVAEEPAPAVEA
EAAPVSTLTSNGRAPNDPREVRRRKREAERLQKEAELAAAAPAEAVVTAEPAPVEAPEVV
EAAPAPAEETAPAPVAEPAVKESAPVAEQAPRAVEHAVHAEEEQHEPKPLV
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgctctggtagac
ggccagcgcctctacgacctggacatcgagtccggagcccgcgagcagaaaaaggccaac
atctataaaggccgcatcactcgcatcgaaccaagcctcgaggctgcctttgtcgatttc
ggctctgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccccgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgagaaagaagagcgtggcaacaagggcgccgccctgaccaccttcatcagcctc
gccggtcgttacctggtactgatgccgaacaacccgcgtgccggcggtatctcccgccgc
atcgaaggcgaagagcgcaacgaactacgtgaagcgctgaacggtctggtggcacccgcc
gacatgggcctgatcgtgcgcactgccggcctgggccgcagcagcgaagagatgcagtgg
gacctcgactacctgctgcaactctggaccgccatcaaggaagcgtccctggatcgttcc
gcgccattcctgatctaccaggaaagcaacgtgatcatccgcgcgatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagtgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtg
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtggtc
gaactgccttccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcccgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcagcggaagaaatcgctcgccaactgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgtgccgtggaagaaaaagtc
cgcgaatgcctggaagccgaccgcgctcgcgtgcagatcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatccctgggcgaaagcagcggcatcgtc
tgcccgcgctgcaacggcaccggcatcatccgtgatgtcgagtcgctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtgcgcgcccaagtg
ccgattccggtcgccgctttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgcgcccgcatcgtcatcctgccgaacgatcacctcgaaacgccacacttc
gaagttcagcgcctgcgtgatgacagcccggaagccaacaccaaccagtccagctacgaa
atcgcagcggccgccgccgaagccgaagaagtccagccaaccgccgccacccgcaccctg
gttcgccaggaagcggcagtgaagactgccccggcccgcgccaatgctccggttccgacc
gaagtcgtcgctgcccctgtagctgcaccggctccagtggccgaaccaagcctgttcaaa
ggcctggtgaagtccctggtcagcctgttcgctaccaaggaagagccagccgcaccggtc
gtggtcgagaagccagtgaccgagcgccctgctcgcagcaacgaagaacagcgtcgcaat
ggccgccagcagagccgcaaccgtaacggtcgccgcgatgaagagcgcaagccgcgcgaa
gaacgtgccccgcgtgaagaacgcgcaccacgggaagagcgtcagccacgcgaagttcgc
gaagcccgtgaagaagttcaagcggtagcccgcgaagaacgcgcaccccgtgcaccgcgc
gaagaacgccagccacgcgccccgcgtgaagagcgcaagccacgtggcgagcgtgaagaa
cgtgtgcgtgaactgcgcgagcctctggacgccgctccagctgcagccgctgctaccgcc
gccgttgttgccgaagaacgtccggcgcgccagcctcgcgaagagcgccagccacgtgcg
ccacgtgaagagcgccaaccacgtgccgaacaggctcaagccgctgccgccagcgaagaa
gaagcgctgccgaacgaagagcaactgcaggaagacggccaggacaacgcagaaggcgaa
cgtccacgtcgtcgctcccgcggccagcgtcgtcgcagcaaccgtcgcgagcgtcaacgt
gatgccaacggcaatgtgatcgaaggctcggaagaaaacgccgaagagccaagcagcgcc
gatctggctgccggccttgcggtaactgccgcggttgccagcaccgccatcagcgccaac
gctgaagccgaagctcaccagcaagccgaacgtgcgactgccgctgtagaagacaaggct
ccggaagccccagtggttgaagccaccacaccggtagaagccccagtggttcctgcagtg
gaagtggctccagtggctgaagagcaggctcaggttgaagtggctgccgaaccggccgtg
gtcgtcgaagcccagcctgtggttgccgaacaaccggcagcagaacctgtagcccaggcg
ccagtggttgaagaaaaggccatcgagccggttcaggaagcccctgcgccagccccggtt
gccgagccagcattggtggttgaagagcctgtagcggcccagcagcctgcccaggttgaa
gagccggctccggttgcagcaccagtggtggccgaagagcctgcacccgctgtcgaagct
gaagccgcgccggtcagcaccctgaccagcaatggccgtgcaccgaacgacccacgcgaa
gtgcgtcgccgcaagcgtgaagccgagcgcctgcagaaggaagccgagctggctgccgct
gctccggctgaagccgtggtgaccgccgagccggctccggtagaagcgccggaggtggtc
gaggccgcccctgcgccagccgaagagactgcaccggcgccagtggccgaacctgcagtg
aaagaatcggcccctgtggccgagcaagcaccgcgcgctgtcgagcacgctgtgcatgcc
gaggaagaacagcacgagcctaaacctctcgtctga
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