Pseudomonas fluorescens UK4: HZ99_09180
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Entry
HZ99_09180 CDS
T03319
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pfn
Pseudomonas fluorescens UK4
Pathway
pfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HZ99_09180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfn03019
]
HZ99_09180
03009 Ribosome biogenesis [BR:
pfn03009
]
HZ99_09180
Enzymes [BR:
pfn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HZ99_09180
Messenger RNA biogenesis [BR:
pfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HZ99_09180
Ribosome biogenesis [BR:
pfn03009
]
Prokaryotic type
rRNA processing factors
HZ99_09180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AIG02316
UniProt:
A0A379IIT5
LinkDB
All DBs
Position
2055543..2058764
Genome browser
AA seq
1073 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPA
EAAAPVAAPASLPEPSLFKGLVKSLVSLFATKEEPAAPAVVEKPAAERPARNEERRNGRQ
QSRNRNGRRDEERKPREERAPREERAPREERQRRETREEIPAVAREERAPSEERAPREER
APRAPRAPREDRKPRGEREERVRELREPLDAAPAVAAVAVDAATEERPARQPREERAPRP
PREERQPRAEQAAAASEEELLTNDEQSQEDGQDNAEGDRPRRRSRGQRRRSNRRERQRDA
NGNVIEGSEETGEATEETANNEPTSTELAAGLAVTAAVASSVISAPAEAEANQQAEHATA
AVQETAVVEAPVVEATTVVETPAAPEVEVAPVREAQPEAEVVAAPAVVVEPQPVVEAVVE
APAAEPTPQVREVREEQTAFQWTAEPAITAEAPAPAPIEAPAPVAEVVIVEPAVVAEPVV
VAEPAAVAVQTPVIAEVAAPVVEAPASALTENGRAPNDPREVRRRKREAERLQKEAEAAV
ATVVVEAAPAAPAIEAVVEHTAPAIDENLRSVDEVVEHNPKALEEEHEPKPLA
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgagtccggtgcacgcgagcagaagaaggccaac
atctataaaggccggattactcgcatcgagccgagccttgaggctgcctttgtcgatttt
ggctctgagcgccatggcttcctgcccctcaaagaaatttcccgcgaatacttcaagaaa
gcccctgaaggccgcgtgaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtagaaaaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagcctg
gctggccgctacctggtcctgatgccgaacaacccgcgtgccggcggcatctcccgtcgc
atcgaaggcgaagagcgcaacgaactgcgtgaagcgctgaacggcctcatcgcccctgcc
gacatgggcttgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcagtgg
gacctcgattacctgctgcaactgtggaccgctatcaaagaagcctccctggaccgttcc
gcgccattcctgatctatcaggaaagcaacgtgatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtg
ccgctgttcaaccgcttccagatcgaaagccagatcgaaaccgccttccagcgtgtggtc
gagctgccttccggcggctccatcgtgatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcacgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggccgaagaaatcgctcgccaactgcgcctgcgtgatatcggcggtctgatc
gtgatcgacttcatcgacatgaccccagccaagaaccagcgcgccgtggaagaaaaagtc
cgcgagtgcctggaagccgaccgtgcccgcgtacaggttggccgtatctcgcgcttcggc
ctgctggaaatgtcccgccagcgcctgcgtccatccctgggcgaaagcagcggtatcgtc
tgcccgcgttgcaacggcaccggcattatccgtgacgttgaatcgctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtccgcgcgcaggtg
ccgatcccggttgcagccttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgtatcgtgatcctgccgaacgatcacctcgagacgccgcacttc
gaagtacagcgcctgcgcgacgacagcccggaggcccacagcggccagtccagctacgaa
atcgccgctgccgctgccgaagtcgaagaagtccagccagccgccgcgacccgcaccctg
gttcgccaggaagctgccgtcaagaccgcgccagcccgtgccaatgcaccggtaccggct
gaagccgctgcaccggttgccgcgcctgcctccctgccagagccaagcctgttcaagggc
ctggtgaagtcgctggtcagcctgttcgccaccaaggaagagcctgcagctccagccgtg
gtcgagaagccagctgctgaacgcccggcacgcaacgaagagcgtcgcaacggtcgccag
cagagccgcaaccgcaacggtcgccgtgacgaagagcgcaagcctcgcgaagagcgggca
ccgcgtgaggaacgcgcaccacgtgaagagcgccagcgccgcgaaacccgtgaagaaatc
ccggccgtagcccgtgaagaacgcgcaccgagtgaagagcgtgcaccacgtgaagaacgc
gcaccgcgtgcgcctcgtgccccgcgtgaagatcgcaagccacgtggcgagcgtgaagaa
cgtgtacgtgaactgcgcgagccactggacgccgccccagctgtagcagccgttgcggtg
gatgccgcaactgaagaacgcccggcccgccagccccgtgaagagcgtgcgccacgccca
ccgcgtgaagagcgtcaaccacgcgccgaacaggctgccgcagccagcgaagaagaactg
ctgaccaacgacgaacagtcacaggaagatggccaggacaacgccgaaggcgatcgtcca
cgccgccgctctcgtggccagcgtcgtcgcagtaaccgtcgcgagcgtcagcgtgacgcc
aacggcaacgtgatcgaaggctcggaagagaccggcgaagccactgaagaaaccgccaac
aacgagccaaccagcaccgaactggctgctggcctggccgttaccgctgcggttgccagc
tcggtcatcagcgctcctgccgaagccgaagccaaccagcaggccgaacacgccaccgct
gccgtgcaggaaactgccgtcgtcgaggcgccggttgtcgaagccaccaccgtggtcgaa
acacctgccgctccggaagtggaagttgcaccggttcgcgaagcccagcctgaagccgaa
gtcgtggctgcacctgcggtcgtggttgagccgcagcctgtggttgaagccgttgtcgaa
gcgccagccgccgagccaaccccgcaagtgcgtgaagttcgcgaagaacagaccgccttc
cagtggactgccgaacccgccatcaccgctgaagcaccggcaccggcaccgatagaagcg
ccagcaccggttgccgaagtggttatcgtcgaacctgcggtggttgcagagccagtcgtg
gttgccgagcctgctgcggtggccgtgcaaaccccagtgattgccgaagtggccgcacca
gtggttgaagcccctgccagcgcccttaccgaaaacggccgtgcgcctaacgacccacgt
gaagtgcgtcgtcgcaagcgtgaagccgagcgtctgcaaaaagaagccgaagcagcagtg
gccacggtcgtagtcgaagcagccccggctgcaccggccatcgaagccgtagttgagcac
actgccccggccatcgacgagaacctgcgttccgttgacgaagtggtagagcacaaccca
aaagccctggaagaagaacacgagcctaaacccctcgcctga
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