Pseudomonas fluorescens Pf0-1: Pfl01_4166
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Entry
Pfl01_4166 CDS
T00283
Name
(GenBank) putative ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pfo
Pseudomonas fluorescens Pf0-1
Pathway
pfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pfl01_4166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfo03019
]
Pfl01_4166
03009 Ribosome biogenesis [BR:
pfo03009
]
Pfl01_4166
Enzymes [BR:
pfo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Pfl01_4166
Messenger RNA biogenesis [BR:
pfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pfl01_4166
Ribosome biogenesis [BR:
pfo03009
]
Prokaryotic type
rRNA processing factors
Pfl01_4166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
ABA75903
UniProt:
Q3K8K1
LinkDB
All DBs
Position
4701795..4705043
Genome browser
AA seq
1082 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAATNQSSYEIAAAAADVEDVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAPAPAPAPVAAPEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPATERPARNEERRNG
RQQSRNRNGRRDEERKPREERAPREERAPREPREERQPREPREVREPREVREPRESRDEA
PVAREERAPRAPREERAPRAPREDRKPRGEREERVRELREPLDAAPAVAAAATAEERPAR
QPREERAPRPPREERQPRAEQAAAAVAEEEITTNEEQLPEDGSENAEGDRPRRRSRGQRR
RSNRRERQRDANGNVIEGSEESESGENAQAPSTADLAAGLAVTAAVASTVISAPAEAQAH
EQAERATAATLETAPVEAPVVEATTPVEAAAAPEVEVAPVREAQPQVEAAAEPAVTFEAP
AVVEESVVETGAETVTETVREVREEQTAFNWVAEPAVTETPAPVVEAPVVEEAKAAEPVV
VAEPTPVAEAPVIEAPVVAEAPAPVVEAAPVSALTPSGRAPNDPREVRRRKREEERLQKE
AELAAAAAAAAPAAEVVEAAPAPVAEEVAVEAVIAEAPRSVQEAVEQHAEAQEKEHEPKP
LV
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccagcgcctctacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccgcatcactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagcctg
gccggtcgttacctcgttctgatgccgaacaacccgcgtgccggcggcatctcccgtcgc
atcgaaggcgaagagcgcaacgaactgcgtgaagcgctgaacggcctggtcgcgccagcc
gacatgggtctgatcgtgcgcactgcaggccttggccgcagcagcgaagaaatgcagtgg
gacctcgattacctgctgcaactctggaccgctatcaaggaagcctcgctggatcgttcc
gcgccattcctgatctaccaggaaagcaacgtgatcatccgcgcgatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagtgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtatgaagacagcgtt
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtcgtc
gaactgccgtccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
cttgaagccgccgaagaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgacccctgccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagccgaccgcgctcgcgtgcagatcggtcgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccttcgctgggcgaaagcagcggcatcgtc
tgcccgcgttgcagcggcaccggcatcatccgtgacgtcgaatccctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgtaccgccgaagttcgcgctcaagtg
ccgatcccggtggccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgcgcccgcattgtcatcctgccgaacgatcacctcgaaaccccgcatttc
gaagttcagcgtctgcgtgacgacagcccggaagccgcgaccaaccagtccagctacgaa
atcgctgccgccgctgccgatgtcgaagacgttcagccagccgccgcgacccgcaccctg
gttcgccaggaagccgcggtcaagaccgctccggctcgcgccaacgctccggttccgacc
gaagtcgccgcaccggccccggcacctgctccggttgccgcgccagagccaagcctgttc
aaaggcctggtgaagtcgctggtcagcctgttcgccaccaaggaagagccagttgctccg
gtggtggttgaaaaacctgccaccgagcgtccggcccgcaacgaagagcgtcgcaacggt
cgtcagcagagccgtaaccgtaacggtcgccgcgatgaagaacgcaaaccgcgcgaagaa
cgtgcaccgcgtgaagagcgcgcaccacgtgagccgcgtgaagagcgtcagccgcgcgag
ccacgtgaagtccgcgagccacgtgaagtccgcgagccacgcgaatcccgtgacgaagca
ccggtagcccgcgaagaacgcgcaccacgcgcccctcgtgaagaacgtgcaccacgtgct
ccgcgtgaagatcgcaagccgcgtggcgagcgtgaagaacgcgtacgtgaactgcgcgag
ccgctggatgccgctccggcagttgctgccgccgccaccgctgaagagcgtccggcccgt
cagccacgtgaagagcgtgcgccacgtcctccgcgcgaagagcgtcaaccgcgcgccgaa
caggccgctgctgccgtcgctgaagaagaaatcaccaccaacgaagagcaactgccggaa
gacggttcggagaacgccgaaggcgatcgtccacgccgccgctcccgtggtcagcgtcgt
cgcagcaaccgtcgcgagcgtcagcgtgatgccaacggcaacgtgatcgaaggttcggaa
gagtccgagtccggcgaaaacgcccaggcgccaagcactgccgatctggctgctggtctg
gctgttaccgctgctgttgccagcaccgtgatcagcgctccggctgaagctcaggcccac
gagcaagctgaacgcgccaccgctgcaaccctggaaactgctccagtagaagcgccggtt
gttgaagcaaccactccggtagaagcagctgccgctccggaagtcgaagtggctccggtt
cgcgaagctcagcctcaggttgaagcagctgccgaaccagcggtgaccttcgaagcacca
gccgtagttgaagagtcggttgtcgaaaccggcgctgaaaccgtgaccgaaaccgtgcgt
gaagttcgcgaagaacagaccgcgttcaactgggtcgccgagccggctgtcactgaaaca
ccagcgccagtggttgaagcgcctgttgttgaagaagccaaggctgccgagccagtggtg
gttgccgaaccgactcctgtcgcagaagcaccggtcatcgaggcgccagtggttgccgaa
gcgccagcccctgtggttgaagctgctccggtcagcgccctgaccccaagcggccgcgcg
ccgaacgacccgcgtgaagtgcgtcgtcgcaagcgtgaagaagagcgtctgcagaaggaa
gccgaactggctgccgctgccgccgctgctgctccagctgccgaagtggtcgaggcggct
cctgccccggtcgctgaggaagtggccgttgaagccgtgattgccgaagcaccacgctcc
gttcaggaagcggtcgagcaacacgcagaggctcaggaaaaagaacacgagcctaaaccc
ctcgtctga
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