Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1: PFREUD_08440
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Entry
PFREUD_08440 CDS
T01252
Name
(GenBank) Ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pfr
Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
Pathway
pfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFREUD_08440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfr03019
]
PFREUD_08440
03009 Ribosome biogenesis [BR:
pfr03009
]
PFREUD_08440
Enzymes [BR:
pfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PFREUD_08440
Messenger RNA biogenesis [BR:
pfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PFREUD_08440
Ribosome biogenesis [BR:
pfr03009
]
Prokaryotic type
rRNA processing factors
PFREUD_08440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
CBL56371
UniProt:
D7GCW0
LinkDB
All DBs
Position
961432..964218
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AA seq
928 aa
AA seq
DB search
MLEENPSKEPTGAEEQLLRPPAGRRSKTRPAGPPAPVTQPPATQPPTNSPATSTADEATT
KPKTTRRATTRKKAEAPATTPDTQPAAKQPDTTATAEQGEATAPAAKKAPSRRSRTTRTA
AKAPEAESTTSPAAEGHEGGSDDPVVAAIAAVMAQREKPARTTRTRASRKAGPAEPVKAA
ASADQATVTETTTDQATADEKPKTTRRRRATAKQGQPAPAATSESGEQGASTDERLDAAL
AKAHKAAPRNRRGKATAAQDEDGASDKKAALDSLTEAIAHGEQDNDEHHDDAHEQEATQE
QRPKRRGRRAEPAKAEADHAEDDQHDEEHQGSPSDAEGNGEDSSEDEGEHGSHRRRRRRG
GRRRRRSSEDSNDSEDNGEDSNGESGSGHEADADHGSDHGSDTDSNGTQHRRRRRRRRNG
SDADSAELPVRVREPRHHGSDEVTGIEGSTRLEAKRQRRKEGRAAGRRRAPILSEAEFLA
RRESVDRKMIIRQREDYTQLAVLEDGLLVEHYVDRKASASLIGNIYLGKVQNVLPSMEAA
FIDIGRGRNAVLYAGEVNWDSMEKGHKGSRRIEDALKPGQTVLVQASKDPIGAKGARLTG
HISLPGRYVVYSPDGHLSGISRKLSDTERHRLKNIVNDAIDDSSSVIVRTAAEGVTEEAL
RQDVDRLKAHWDVIEKKVAEGHSPQQLYVEPDLTLRIVRDLFTEDFNELIVEGDGGPEDA
FETVHEYVEHVAPNLADRLEHWDTTKGDLFTKYRIDEQISKALERKVFLPSGGSLVIDRT
EAMTVIDVNTGKFTGAGGNLEETVTKNNLEAADEIVRQMRLRDLGGMIVVDFIDMVLPAN
RELLLRRLVECLGRDRTRHQVSEVTSLGLVQMTRKRIGTGLAEAFTEECETCGGRGYVRH
DEPVASQAPADGGERHRRGGRRGGRSGK
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaggaaaaccccagcaaggaaccgaccggcgccgaagaacagcttcttcgaccc
cctgcgggcaggcgatcgaagacccgtcccgccgggccgcccgcaccggtgacccagcca
ccagcaacccaaccacccacgaactccccggccacgtcaactgccgatgaggcgacgacc
aagccgaagaccacccggcgagccacgacccgcaagaaggccgaagcgcccgccaccacc
ccggacacccagcccgccgcgaagcagcctgacaccacggccaccgccgagcagggcgag
gccaccgctccggccgccaagaaggcccccagccgccgcagccgcaccaccaggaccgcg
gccaaggcacctgaggccgaatccacgacaagccccgccgccgagggccacgagggtgga
tcagacgacccggtcgtcgccgccatcgccgccgtgatggcccagcgcgagaagccggcc
cggaccacccgcacacgggcatcccgcaaggcgggcccggccgagccggtgaaggcagct
gcgtccgccgaccaggcaaccgtcacggagacgacaaccgatcaggccaccgccgacgag
aagccgaagaccacccggcgtcgtcgcgccacggccaagcagggccagcccgcgccggcc
gcaacgtccgagagcggcgagcagggcgcgtccaccgacgaacgcctggacgccgcactg
gccaaggcccacaaggcagcgccgcgcaaccgccgcggcaaggccaccgccgcccaggac
gaggacggtgcctccgacaagaaggcggccctcgactcgctgaccgaggcaatcgcccac
ggcgagcaggacaatgacgagcatcacgacgatgcccacgagcaggaagccacccaggaa
cagcgtcccaagcgccgtggcaggcgtgccgagccggccaaggccgaagccgaccacgcc
gaggacgaccagcacgacgaggagcaccagggttcgccgtccgacgccgagggcaatggc
gaggacagctccgaggacgagggcgagcacggttcgcaccgtcgccgtcgtcgtcgcggg
ggacgtcgccgccgtcgcagttccgaggactccaacgactcggaggacaacggcgaggac
tcgaatggtgagtcgggttcgggccacgaggccgatgccgatcatggttcggaccacggt
tcggacaccgactccaacggcacccagcaccgccgtcgccgtcgtcgccgccgcaacggc
tccgatgccgactccgccgaactgccggtgcgcgtgcgcgagccgcgacaccacggatcc
gacgaggtcaccggcatcgagggctccacgcgactggaggccaagcgccaacgccgcaag
gagggacgggccgccggccgtcgccgcgcccccatcctgagcgaggcggagttcctggcc
cgtcgcgagtcggttgatcgcaagatgatcattcgccagcgcgaggactacacccagctc
gctgtcctcgaggacggcctgttggtggagcactacgtcgatcgcaaggcgtccgcgtcg
ctgatcggcaacatctacctgggcaaggtacagaatgtgctgcccagcatggaggccgcc
ttcatcgacatcggtcgtggccgcaatgccgtgctgtacgccggcgaggtcaactgggac
tcgatggagaagggccacaagggctcacggcgcatcgaggatgcgctcaagcccggccag
accgtgctcgtgcaggccagcaaggacccgatcggcgccaagggtgcccggctcaccgga
cacatctccctgccgggccgctatgtcgtgtactcgcccgatgggcacctgtcgggcatc
agccgaaagctgtctgacaccgagcgccatcgcctgaagaacatcgtcaatgacgccatc
gacgattcgtcgtcggtgatcgtgcgcaccgccgccgagggcgtgaccgaggaggcgctg
cgccaggatgtggatcgcctcaaggcccactgggatgtcatcgagaagaaggtcgccgag
ggccattcgccccagcagctgtacgtggagcccgacctgacgctgcgcatcgtgcgcgat
ctgttcaccgaggacttcaatgaactcatcgtcgagggcgacggcggcccggaggatgcc
ttcgagaccgtgcatgaatatgtcgaacacgtggccccgaacctggccgaccggctggag
cactgggacaccacgaagggcgatctgttcaccaagtaccgcatcgacgagcagatctcc
aaggccctggaacgcaaggtcttcctgccctccggcggctccctggtgatcgaccgcacc
gaggcaatgaccgtgattgacgtcaacaccggcaagttcaccggggcgggcggcaacctc
gaggagacggtgaccaagaacaacctcgaggccgccgatgagatcgtgcgccagatgagg
ctgcgcgacctcggaggcatgatcgtggtcgacttcatcgacatggtgctgcccgcgaac
cgcgagttgctgctgcgtcggctggtcgaatgcctcgggcgtgaccgcacccgccaccag
gtcagtgaggtgaccagcctgggcctggtgcagatgacgcgcaagcggatcggcaccggc
ctggcggaggccttcaccgaggaatgtgagacctgtgggggacgcggctatgtgcgccac
gacgagccggtcgccagtcaggcacccgccgatggtggggaacgccaccgtcgtggtggc
cgacgcggtgggcgttcgggcaagtag
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