Pseudomonas monsensis: HV782_021245
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Entry
HV782_021245 CDS
T07539
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmoe
Pseudomonas monsensis
Pathway
pmoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HV782_021245 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmoe03019
]
HV782_021245 (rne)
03009 Ribosome biogenesis [BR:
pmoe03009
]
HV782_021245 (rne)
Enzymes [BR:
pmoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HV782_021245 (rne)
Messenger RNA biogenesis [BR:
pmoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HV782_021245 (rne)
Ribosome biogenesis [BR:
pmoe03009
]
Prokaryotic type
rRNA processing factors
HV782_021245 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QXH99068
LinkDB
All DBs
Position
4822641..4825892
Genome browser
AA seq
1083 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAATNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAPAAPAPAPVAAPEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPATERPARNEERRN
GRQQSRNRNGRRDEERKPREERAPREERAPREPREERAPREAREVREPREARSEAPAARE
ERAPRAPREERAPRAPREDRKPRGEREERVRELREPLDATPAAPAAAAAVVAEERPARQP
REERAPRPPREERQPRAEQAAAAVAEEEVTTNEEQLPEDGQDTAEGDRPRRRSRGQRRRS
NRRERQRDANGNVIEGSEESESGENAEAPGTADLAAGLAVTAAVASSVISAPAEAQAHEQ
AERATAATLETAPVEAPVVEATTPVEVIAAPEVEVAPVREAQPQVEAAAEPAPVVEAPAM
VAEPVVETVAETVTESVREVREEQTAFNWVAEPAVAETPAPVVEAPAAEEAKAAEPVVEA
VQPAPAPVVEAPVVEAPVVAETPAPVVEAAAPVSALTPNGRAPNDPREVRRRKREEERLA
KEAELAAAAAPAVAAEVVEAAPAPAAEEAVVESVIAEAPRSVQDAVEQHEVAQEKEHEPK
PLV
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccgtatcactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctg
gccggtcgttacctcgtgctgatgccgaacaacccgcgtgccggcggtatctcccgtcgc
atcgaaggcgaagagcgcaacgaactgcgtgaagcgctgaacggcctggtggcaccagcc
gacatgggtctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcagtgg
gacctcgattacctgctgcaactgtggaccgccatcaaagaagcctcgctggatcgctcc
gcgcctttcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtg
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgcgttccagcgtgtcgtc
gaactgccttccggcggctccatcgttatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
cttgaagccgccgaagaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcattgacatgacccctgccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagccgaccgcgctcgcgtgcagatcggccgcatctcgcgctttggc
ctgctggaaatgtcccgtcagcgcctgcgtccatccctgggcgaaagcagcggcatcgtc
tgcccgcgctgcaacggcaccggcatcatccgtgacgttgaatcgctgtcgctggccatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcactgccgaagtgcgcgctcaagtg
ccgattccggtcgccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgtatcgtcatcctgccgaacgatcacctcgaaacgccgcacttc
gaagttcagcgtctgcgtgacgacagcccggaagccgcgaccaaccagtccagctacgag
atcgctgctgccgctgccgaagtcgaagaagtccagccagccgccgcgacccgcaccctg
gttcgccaggaagccgcggtcaaaaccgctccggcccgcgccaacgctccggtgccgacc
gaagtcgccgcacctgcggctccagcaccggcaccggttgccgcgccagagccaagcctg
ttcaaaggcctggtgaaatcgctggtcagcctgttcgccaccaaggaagagccagccgct
ccggtggtggttgaaaaaccggccaccgagcgtccggcccgcaatgaagagcgtcgcaac
ggtcgtcagcagagccgcaaccgtaatggtcgccgcgatgaagaacgcaagccgcgcgaa
gaacgtgcgccacgtgaagaacgtgcaccgcgtgagccgcgtgaagaacgcgccccacgt
gaagcccgtgaagtccgcgagccgcgtgaagcccgcagcgaagcaccagccgcccgcgaa
gaacgcgcaccacgcgctccgcgtgaagaacgtgcaccgcgtgccccacgtgaagaccgc
aagccacgtggcgagcgtgaagagcgtgtgcgtgaactgcgcgaacctctggacgccact
cctgccgctccagccgccgctgctgctgtcgttgccgaagagcgtccggctcgtcagccg
cgtgaagagcgcgcgccgcgtccgccgcgtgaagagcgtcagccacgtgccgagcaggcc
gctgctgccgttgccgaagaagaagtgactacgaacgaagagcaactgccggaagacggt
caagacaccgccgaaggcgatcgtccgcgtcgtcgctcccgtggtcagcgtcgtcgcagc
aaccgtcgtgagcgtcagcgtgatgccaacggcaacgtaatcgaaggttcggaagaatcc
gagtctggcgaaaacgctgaagcaccaggcactgccgatctggctgccggcctggccgtc
accgccgctgttgccagcagcgtgatcagcgctccggctgaagcacaggctcacgagcaa
gccgaacgcgccaccgccgccaccctggaaaccgctccagtggaagcgccggttgtcgaa
gcgactacgccggtggaagtgatcgccgctccggaagtcgaagtggcaccggttcgcgaa
gctcagcctcaggttgaagctgctgccgagcctgcgccggttgtcgaagccccagctatg
gtggcagagccagttgttgaaaccgtcgctgaaaccgtgactgaaagcgtgcgtgaagtt
cgtgaagaacaaaccgcgttcaactgggtggccgagcctgccgtcgctgaaaccccggcg
cccgtagtcgaggccccagccgctgaagaagccaaggctgccgaacccgtagtggaagcc
gttcaacctgctccagcgccagtcgttgaagcgccggttgtcgaagcgcccgtggtagca
gaaactccggccccggtggttgaagctgcagcaccggtcagcgccctgacgccaaacggt
cgcgcgcctaacgatccgcgtgaagtgcgtcgtcgcaagcgtgaagaagagcgtctggcc
aaagaagccgaactggctgctgcggcagctccagcggtcgctgctgaagtagtcgaggca
gcccctgccccggccgcagaggaagctgtcgttgagtcggtgattgctgaagcaccacgc
tccgttcaggacgcggtcgagcagcacgaagtggcccaggaaaaagaacacgagcctaaa
ccgctcgtctga
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