Pseudomonas monteilii SB3101: X970_05630
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Entry
X970_05630 CDS
T02973
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmot
Pseudomonas monteilii SB3101
Pathway
pmot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X970_05630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmot03019
]
X970_05630
03009 Ribosome biogenesis [BR:
pmot03009
]
X970_05630
Enzymes [BR:
pmot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
X970_05630
Messenger RNA biogenesis [BR:
pmot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
X970_05630
Ribosome biogenesis [BR:
pmot03009
]
Prokaryotic type
rRNA processing factors
X970_05630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AHC86913
UniProt:
V9UXW7
LinkDB
All DBs
Position
complement(1194601..1197873)
Genome browser
AA seq
1090 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASQDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPEVLSNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPATV
EEPQPAAPVAPAPVAPEPSLFKGLVKSLVSLFAGKEEPAAAPVVTAAEKPAAERSPRNEE
RRNGRQQSRNRNGRRDEERKPREERAERAPREERAPREERAPREERAPREERAPREERAP
REERAPREERAPREERAPRQPREDRRGNRGEERVRELREPLDATPAEREERQQREERVAR
EERTPREERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPR
PPREERQPRVAEEAAEQAAELAEEQLPNEELLQDEQEGTDGERPRRRSRGQRRRSNRRER
QRNANGELIDGSEEEGSEEQPQQHQATELGAELAAGLAVTAAVASSNISADAEAQANQQA
ELATAEVAQQVEQAEKFEQIEAAAKAEEVAEAPVVEQPVSEPVAVVEATAEPVVEIAPQP
VVDEAPAAEPVVVAEAPVEAPAVEAGEIEQAPAVIEAAPVAEQPAPVVEAQPEVVAEPAP
VAVEPAPVEAPAAVEPATVMLANGRAPNDPREVRRRKREAEAAAKAAQEAAAATEEPALE
ASDEQKPHHG
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcgactcaacccgaagagttgcgtgtagccctggtggac
ggccaacgtctctacgacctggacatcgagtccggcgcgcgcgagcagaaaaaggccaac
atctacaaaggcaagatcacccgcatcgaacccagcctcgaagccgccttcgtcgacttc
ggctccgaacgtcacggcttcctgccgctgaaagaaatctcccgcgaatacttcaagaaa
gcccccgaagggcgggtcaacatcaaggaagtactgagcgaaggccaggaagtcatcgtc
caggtcgagaaggaagagcgtggcaacaaaggcgccgccctcaccaccttcatcagcctg
gccggccgctacctggtgctgatgccgaacaacccgcgcgccggtggcatctcccgccgc
atcgaaggcgaagagcgcaacgaactgcgtgaagccctgaacggcctgaccgtgccgggc
gacatgggcctgatcgtgcgtactgccggccttggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactgtggaccgccatcaaggaagcgtcccaggaccgcgcc
gcgccattcctgatctaccaggaaagcaacgtcatcattcgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgatgcccaggaagaagccctgacc
ttcatccgccaggtcatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgtg
ccgctgttcaaccgcttccagatcgaaagccagatcgagaccgccttccagcgcgtggtc
gacctgccgtccggcggttcgatcgtgatcgacccgaccgaagccctggtgtcgatcgac
atcaactcggcgcgtgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctgcgcctgcgtgacatcggtggcctgatc
gtcatcgacttcatcgacatgaccccggcgaaaaaccagcgcgccgtcgaagaacgtgtt
cgcgagtgcctggaagccgaccgcgcccgcgtccaggtcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgcccttcgctgggcgaaagcagcggcatcgtc
tgcccacgctgctccggcaccggcatcatccgtgacgtcgaatcgctgtcgctggccatc
ctgcgcctgatcgaagaagaagccctgaaggaccgcaccgccgaagttcgcgcccaggtg
ccgatcccggtggctgccttcctgctcaacgagaagcgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcgcgcatcatcatcctgccgaacgatcacctggaaactcctcacttc
gaagtacagcgcctgcgcgacgacaatccggaagtgctgagcaaccagtccagctacgag
atcgccgccgccgaagccgaagaagcgccgcagccgaccgccacccgcaccctggttcgc
caggaagccgcagtcaagaccgccccggcccgcgccaacgcgccggtaccggccactgtc
gaagaaccgcagcctgccgcaccggtcgcccctgccccggtcgctccggagccaagcctg
ttcaagggcctggtgaagtcgctggtaagcctgttcgccggcaaggaagagcctgccgca
gcgccggttgtcactgccgccgagaagccggccgccgagcgcagcccacgcaacgaagaa
cgccgcaacggccgccagcaaagccgcaaccgcaacggccgtcgcgacgaagaacgcaag
ccgcgtgaagaacgtgccgagcgcgcacctcgtgaagaacgtgccccgcgcgaagaacgc
gcaccacgtgaagaacgcgccccacgcgaagagcgtgcaccacgtgaagaacgcgcccca
cgcgaagagcgtgcaccgcgtgaagaacgtgctccacgcgaagagcgtgctccacgccag
ccacgcgaagaccgccgcggcaaccgtggcgaagagcgcgtgcgcgaactgcgcgagcca
ctggacgccacccctgccgagcgtgaagaacgtcagcagcgcgaggaacgtgtagcccgt
gaagaacgtaccccgcgtgaagagcgtgcacctcgcgaggaacgcgcaccacgtgaagag
cgcgcacctcgtgaagaacgtgctccacgtgaagaacgcgcacctcgcgaagaacgtgct
cctcgtgaagagcgcgcacctcgtgaagaacgtgctccacgcgaagaacgcgcccctcgc
ccaccacgcgaagaacgtcagccacgcgtagccgaagaagccgccgagcaggctgccgag
ctggccgaagagcaactgccgaacgaagagctgctgcaggacgaacaggaaggcaccgat
ggcgagcgcccgcgccgccgttcccgtggccagcgtcgtcgcagcaaccgtcgtgagcgt
cagcgcaacgccaacggcgagctgatcgatggcagcgaggaagaaggcagcgaagagcag
ccacaacagcaccaggccaccgagctgggtgccgaactggccgccggcctggccgtgact
gccgctgtcgccagcagcaacatcagtgccgacgccgaagcccaggccaaccagcaggcc
gagcttgccaccgccgaagtcgcccagcaggtcgagcaggctgagaagttcgagcagatc
gaagctgccgccaaggctgaagaagtggccgaggccccagtggtcgagcagccggtcagc
gagcctgtagccgtggtcgaggcaactgccgagccagtggtcgaaatcgctccgcaacca
gtggtcgacgaagcacctgctgccgaaccggtagtggttgccgaagcaccggtagaagcg
cctgccgtcgaggccggtgaaatcgagcaggccccggccgtgatcgaagccgctccggtt
gccgagcaacctgccccggttgtcgaagcccagccagaagtggtggccgagcctgcccca
gtggcggtcgagcctgcaccggtcgaagcccctgcggcggtggaacctgccactgtcatg
ctggccaatggccgtgcgccgaacgacccgcgtgaagtgcgtcgccgcaagcgtgaggcc
gaggctgccgccaaggccgcacaggaagctgccgcagccaccgaggagccagccctggaa
gccagcgatgagcaaaagcctcatcacggttga
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