Pannonibacter phragmitetus: APZ00_17365
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Entry
APZ00_17365 CDS
T04214
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pphr
Pannonibacter phragmitetus
Pathway
pphr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APZ00_17365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphr03019
]
APZ00_17365
03009 Ribosome biogenesis [BR:
pphr03009
]
APZ00_17365
Enzymes [BR:
pphr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
APZ00_17365
Messenger RNA biogenesis [BR:
pphr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
APZ00_17365
Ribosome biogenesis [BR:
pphr03009
]
Prokaryotic type
rRNA processing factors
APZ00_17365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CDC45
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ALV28611
UniProt:
A0A0U3PIE0
LinkDB
All DBs
Position
complement(3785909..3788569)
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AA seq
886 aa
AA seq
DB search
MANKMLIDAAHPEETRVVVVRGNRVEEFDFEAANRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPAADRLALIEDERHEEERREAAENARHAARETAASEAAK
DGDDSDDDDDDHEDSDKSSSDGDDDADHVESVGAEDAMEEVPERRTRQRKQYKIQEVIKR
RQVLLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITQPADRKRLKKIA
SELEVPEGMGVILRTAGASRTKAEIKRDFEYLMRLWENVRDLTLKSSAPCLVYEEGSLIK
RSIRDLYNKDIDEVLVAGEDGYREAKDFMRMLMPSHAKNVQPYREASPIFTRFGVEPQLD
AMFSPQVTLRSGGYIVINQTEALVSIDVNSGKSTREHNIEDTALQTNLEAAEEVSRQLRL
RDLAGLIVIDFIDMEENKNNRTVERKLKDCLKNDRARIQVGRISHFGLMEMSRQRIRTGV
LESSTTPCPHCHGSGMIRSVESVALHVLRSLEDFLLKGVTHNLIVRTNTSVALYILNQKR
RNLGDLEARFGLEIAVVADEVGHGQHYVLERSSLIDRDKIPLPAPPQIQPHMVEIEEIDD
IVEPEEEDEDDVEEELEAASARPSAREQSEDSDRRKRRRRKRRRSPEAGGDRQTGPRQNE
DGSDADAGDHTEGSTGEGEDDEASQGEGAQGDGSDEPKRKRRRGRRGGRRGRRNGEREDG
EEGSDGDEDASGEDADAAAASEDLTGAVEGDEAANGGSFPEAAEAPAAAEADADAPARVE
AAPAVAETAEEAITAAPEAAQEAPAAETPAAEAPVLETVAAEAPAEAAAEAAPAPEVEAP
AEPAAPARPKAPATPVVTSQTAGDGEGPDDEGKPKRSGWWQRRSFF
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaagatgctgatcgacgcggcgcacccggaggaaacccgggtcgtcgtggtg
cgcggcaatcgagttgaagaattcgacttcgaggcagctaaccggaagcaactgcgcggc
aatatctatctggcgaaggtgacgcgggtcgaaccctccctccaggccgcattcgtggaa
tacggcggaaaccggcatggtttcctcgctttcagcgaaatccatcccgactattaccag
atccccgccgctgacaggctggcgctgatcgaagacgagcgtcacgaggaagagcggcgc
gaagctgctgaaaacgcccgtcatgccgcccgcgagactgcggcctcggaagcggcaaag
gacggagacgacagcgacgacgacgacgacgatcacgaggattcggacaagtcgtcctcc
gacggcgacgatgatgccgaccatgttgaatcggtcggcgccgaagatgccatggaagag
gtgccggagcgccgcacccgccagcgcaagcagtacaagatccaggaagtcatcaagcgc
cgccaggtgctgctggtccaggtcgtcaaggaagagcgcggcaacaagggcgctgccctg
accacctatctgtcgctcgccggccgttactcggtgctgatgccgaacacgggccgtggc
ggcggcatttcccgcaagatcacccagcctgccgaccgcaagcgcctgaagaagatcgcc
tccgagctggaggtgccggagggcatgggcgtcatcctgcgcaccgccggtgccagccgc
accaaggccgagatcaagcgcgacttcgaatatctgatgcgcctgtgggagaacgtgcgc
gacctgacgctgaagtccagcgcgccctgcctcgtctatgaggaaggcagcctgatcaag
cgctcgatccgcgatctctacaacaaggacatcgacgaggttctcgtcgccggcgaagac
ggctaccgcgaggccaaggacttcatgcgcatgctcatgccgagccatgccaagaacgtc
cagccctaccgcgaggcctcgccgatcttcacccgcttcggggtggagccgcagctcgat
gccatgttctccccgcaggtcaccctgcgctcgggtggttacatcgtcatcaaccagacg
gaagctctggtctccatcgacgtgaactcgggcaaatccacccgcgagcacaatatcgag
gacaccgccctccagacgaaccttgaagccgccgaggaagtttcgcgccagctgcgcctg
cgcgatctggccggcctcatcgtcatcgacttcatcgacatggaggagaacaagaacaac
cggacggtggagcgcaagctcaaggattgcctgaagaacgaccgcgcacgcatccaggtt
ggccggatctcgcatttcggcctcatggaaatgtcgcgccagcgcatccgcaccggtgtt
ctggaaagctccaccacgccctgcccgcattgccatggctcgggcatgatccgctcggtc
gaatcggttgccctgcatgtgctgcgctcgctggaagacttcctgctgaagggcgtcacc
cacaatctgatcgtgcgtacgaacacgtcagtggcgctttacatcctcaaccagaagcgc
cgcaacctgggtgaccttgaggcccgtttcggcctcgagattgccgtggtcgcggatgag
gtgggccatggccagcattacgtgctggagcgctcgtccctgatcgaccgcgacaagatc
cccctccccgccccgccgcagatccagccgcatatggtcgagatcgaagagatcgacgat
atcgtcgagccggaggaagaggacgaggatgacgtcgaggaggaactggaagcagcctcg
gcacgtccctctgcccgcgagcagtccgaagacagcgaccgccgcaagcgccgccgccgc
aagcgccgccgcagcccggaggcaggcggtgaccgccagaccggcccgcgccagaacgaa
gacggctcggacgctgatgccggcgatcacacagaaggcagcaccggcgaaggcgaagac
gatgaagcgtctcagggtgaaggcgcccagggtgacggttccgacgagcccaagcgcaag
cgccgccgtggccgccgtggcggccgccgcggccgccgcaatggcgagcgcgaggacggt
gaagagggcagcgacggcgacgaggatgcgtccggtgaggatgcagacgcagctgctgct
tccgaagatctgaccggtgccgttgaaggggacgaagccgcaaatggcggctcctttccc
gaagcagccgaagcccccgctgctgcagaggctgacgcagacgctcctgcccgggtggaa
gcagctccggcagtggccgaaacggctgaggaagccataacggccgctcccgaggcagcg
caggaagccccggcggctgaaactccggctgcagaggccccggttctggaaaccgttgcc
gctgaagctccggccgaagctgccgcagaggctgccccggcgcctgaagttgaagcgccc
gcagaaccggcagccccggcccgcccgaaggcaccggcaacgccagtcgtcaccagccag
accgccggtgacggcgaaggcccggatgacgaaggcaagcccaagcgttccggttggtgg
cagcgccgctccttcttctga
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