Phreatobacter stygius: E8M01_27730
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Entry
E8M01_27730 CDS
T05955
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pstg
Phreatobacter stygius
Pathway
pstg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pstg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E8M01_27730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstg03019
]
E8M01_27730
03009 Ribosome biogenesis [BR:
pstg03009
]
E8M01_27730
Enzymes [BR:
pstg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E8M01_27730
Messenger RNA biogenesis [BR:
pstg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E8M01_27730
Ribosome biogenesis [BR:
pstg03009
]
Prokaryotic type
rRNA processing factors
E8M01_27730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QCI67678
UniProt:
A0A4D7BCA7
LinkDB
All DBs
Position
complement(5872021..5875086)
Genome browser
AA seq
1021 aa
AA seq
DB search
MANKMLIDAAHPEETRVVVVRGNRVEEFDFESQSRKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADREALLAEEARSHRDDDDEEGGRSERGGRGAKDGGR
DGGRRRRRRGGPRPRNEAAEAKTSDAVTGDAETDEDEAGAEGHDEAQDDGRDRQDDDRDD
RQNDDGGDEPRSESRDTEENGDGDGDERGNGHVEEAPAEEDVVESVGAGDAYEDMPDRTF
RPRKQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRK
ITNAADRKRLKSIAGDLEVPDGMGVILRTAGANRTKTEVKRDFEYLLRMWETVREVTLKS
NAPTLVYEEGSLIKRSIRDLYNKDIEEVLVAGEEGYKEAKDFMRMLMPSHAKNVKSYREP
QPLFARSGVEAQLDAMFSNTVQLKSGGYIVINPTEALVAIDVNSGRSTREHNIEDTALRT
NAEAADEVARQLRLRDLAGLIVVDFIDMDENRNNRAVEKRMKDALKNDRARIQVGRISHF
GLLEMSRQRIRTGVLESSTEVCATCGGTGHVRSVSSVALHLLRSVEEQLLRSAMYDVVVR
TRTAVALYVLNNKRAHLHELESRFRVSVDITADETVSGQHMFAIEKGAQVHTHETAYRPP
VIAPLPVDPDDLIDDEIEEDDEAEAEVQTSAEPREPREPRGEQRAETEDGEKRRKRRRRR
RRGRGGEGREDGGRDEFGAERPHVAGQANDDLDADDAEDGDDEAGAEDQALEGAATDDAS
SEGRRRRRGRRGGRRNRREDEPGFVAEGETEAGTEAGAETGADEVGEPAVVEAPVVTAEP
AAEAEPKHAGRRGRPRRGKAAAAEELAASEAAEGAATAEAAPAEAAPAPAKPARRRRTPA
ADVAAEAAAVPADTVVQAEPAAAPPARRRRTPAPEPLAQASVETPAEAPVAAPPTPPALP
PMAAPVVAPVVAPVAMSVAPAAVEEPVKRRRTPDPEPVEIVQSATPAAPRRAGWWNRKAE
G
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaagatgctcatcgacgccgcccacccggaagaaacccgggtcgtggtggtc
cgtggtaatcgtgtcgaggaattcgacttcgaaagccagtcacgcaaacagctgcgcggc
aatatctatctcgccaaggtaacgcgggtcgaaccctcgctgcaggctgccttcatcgaa
tatggcggcaaccggcacggcttcctcgccttctcggaaatccatcccgactattaccag
atcccggtcgccgaccgcgaagcgctgctggcggaagaagcccgctcgcatcgtgacgac
gacgacgaggaaggcggccggagcgaacgtggcggccgcggggccaaggacggcggccgc
gatggcggcaggcgccgccggcggcgcggcggtccgcgcccgcgcaacgaggccgccgaa
gccaagacctcggacgcagtgaccggtgacgccgagaccgacgaggacgaggccggcgcc
gaaggccatgacgaggcgcaggacgacggccgcgaccggcaagacgacgaccgcgacgac
cggcagaacgacgacggcggcgacgagccgcgctccgagagccgcgacaccgaagagaac
ggtgacggcgacggcgacgaacgcggcaacggccatgtcgaggaggcaccggccgaagag
gacgtggtcgaatcggtcggcgcgggcgacgcctatgaggacatgcccgaccgcaccttc
cggccgcgcaagcagtacaagatccaggaggtgatcaagcgccggcaggtcatgctggtg
caggtcgtcaaggaagagcgcggcaacaagggcgcggcgctgaccacctatctgtcgctc
gccggccgctattccgtgctgatgccgaacaccgcgcgcggcggcggcatttcgcgcaag
atcaccaatgccgccgaccgcaagcgcctgaagtcgatcgccggcgacctggaagtgccg
gacggcatgggcgtcatcctgcgcaccgccggcgccaaccgcaccaagaccgaagtcaag
cgcgacttcgaatatctcctgcgcatgtgggagacggtgcgcgaggtgaccttgaagtcg
aatgcgccgacgctggtctatgaagaaggctcgctgatcaagcgctcgatccgcgatctc
tacaacaaggacatcgaagaggtcctggtcgccggcgaggaaggctacaaggaagccaag
gacttcatgcgcatgctcatgccgagccatgccaagaacgtgaagtcttatcgcgagccg
cagccgctgttcgcccgctcgggcgtcgaagcccagctcgacgcgatgttctccaacacc
gtgcagctgaaatccggcggctatatcgtcatcaacccgaccgaagccctagtcgccatc
gacgtgaactcgggccgctcgacccgcgagcacaatatcgaggacacggcgctgcgcacc
aatgcggaggccgccgacgaggtggcgcgccagctcaggctgcgcgaccttgccggcctg
atcgtcgtcgacttcatcgacatggacgagaaccgcaacaaccgggcggtcgagaagcgc
atgaaggatgcgctgaagaacgaccgggcgcggatccaggttggccgcatctcgcatttc
ggcctcctggaaatgagccgccagcgcatccgcaccggcgtgcttgaaagctcgaccgag
gtctgcgccacctgcggcggcaccggccatgtccgctcggtctcctcggttgcgctgcac
ctgctgcggtcggtcgaggagcaattgctgcgctcggccatgtatgacgtcgtcgtgcgc
acccgcaccgcggtggcgctctatgtgctcaacaacaagcgcgcccacctgcacgaactg
gagagccggttccgcgtcagcgtcgacatcaccgccgacgagacggtcagcggccagcac
atgttcgccatcgaaaagggcgcgcaggtccatacccatgagaccgcctaccggccgccg
gtgatcgcgccgctgccggtcgacccggacgatctgatcgacgacgagatcgaagaggac
gacgaggccgaggccgaggtgcagaccagcgccgagccgcgcgagccgcgcgagccgcgt
ggtgagcagcgtgccgagaccgaagacggcgaaaagcggcgtaagcgccggcgccggcgg
cggcgcggccgtggcggcgaaggccgcgaagacggcggacgcgatgaattcggcgccgag
cggccgcatgtcgcgggccaggcgaacgacgatctcgatgccgacgacgccgaggacggc
gatgatgaggccggcgccgaggatcaggcgctggaaggtgccgccaccgacgatgcgagc
agcgaaggccgccgccgccggcgcggccgtcgtggcgggcgccgcaaccggcgcgaggac
gaaccgggcttcgtggccgaaggcgagaccgaggccgggaccgaagctggcgccgagacg
ggcgcggacgaggtcggcgaacctgccgtcgtcgaggctccggtcgtgaccgcggaaccg
gccgccgaggccgaaccgaaacatgccggacggcgcggccggccccgtcgtggcaaggct
gccgcggctgaagaactggccgcgagcgaggcagccgaaggcgcggcgactgcggaagcg
gccccggccgaagccgctccggcgccggcgaaaccggcgcgccgccgccggacaccggca
gccgatgtcgctgccgaggcagcggccgttcccgccgacaccgtggttcaggctgagccg
gcggcggcccccccggcgaggcgccggcgcacgcccgcgccggaaccgctggcccaagcc
tctgtcgaaactcctgccgaagcccctgtggcagccccgccgacgccgccggccctgccg
cccatggccgcgccggttgtcgcgccagtcgtggcgccggtggccatgtcggtggcaccg
gcggctgtcgaggagccagtgaaacgccgtcgtacgcccgacccggaaccggtcgagatc
gtgcaatcggcgaccccggccgcgccccggcgcgccggctggtggaaccgcaaggccgag
ggctga
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