Rhizobium favelukesii: LPU83_1498
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Entry
LPU83_1498 CDS
T03046
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhl
Rhizobium favelukesii
Pathway
rhl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPU83_1498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhl03019
]
LPU83_1498
03009 Ribosome biogenesis [BR:
rhl03009
]
LPU83_1498
Enzymes [BR:
rhl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LPU83_1498
Messenger RNA biogenesis [BR:
rhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPU83_1498
Ribosome biogenesis [BR:
rhl03009
]
Prokaryotic type
rRNA processing factors
LPU83_1498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-CCHC
Motif
Other DBs
NCBI-ProteinID:
CDM57170
UniProt:
W6R9W8
LinkDB
All DBs
Position
complement(1482214..1485042)
Genome browser
AA seq
942 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDDDVEHVETAPVDLSTQEQPD
VGVEVPAAEAAPEVETAAVAETVEAVADVAEEAPAKKARPRRSRKKAAPVAEVPASDEAA
SEATVDNDDEGSPGNEMAAMVETDSISEEVDARRRSDDDDDDDHDHEEEVIESVGAEDAM
EEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNT
ARGGGISRKITNPQDRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWE
NVRTLTLQSTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVSGEEGYREAKDFMKMLMPSHA
KVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIMNQTEALVSIDVNSGRSTREH
SIEDTALQTNLEAADEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKNDRAR
IQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGTGHVRSQSSVALHVLRGIEEYLLK
NTTHNITVRTTPDIALYLLNHKRQTILDYEARFGVAIIIDADGSVGSQHFAIDRGEPVEN
PVKIESLFNFAAIPDDEDDDIVVEVDEEEEEELEAKPAASERPAPSAESDGEGRKRKRRR
RRRGRNGNGEPVAADSSSADAEEGDQTDGDDEDEGDESVAATSDTRDEGDETQRRKRRRR
GKRGGRRNREEGGEQEASEAELASDGAEDGETDVTAVDAIEAAAEEAVEAQPAMAAVETG
ATVTEDVKPRRARRSRKASPVEEPVVEEAAAEVVPAVDAEAEAAAADLATPAPEDAKPVR
ANRESNISSSEPTVKSTRSDAAESEGDGKPKKAGWWQRRGFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaagatgcttatcgacgcgtctcacgaggaagagacgcgcgttgttgtcgtt
cgcggaaaccgcatagaagaatttgacttcgagtcgcagcacaagaagcagattcgcggc
aatatctatctcgcaaaggtaacgagggtcgagccctcgctgcaggccgctttcgttgac
tacggcggcaaccggcacggcttcctggcctttgctgaaattcaccccgactactatcag
atcccgcttgctgatcgtcaggccctgcttcgcgccgaagccgaggagcatcgccgcgac
gacgacgtcgaacatgtcgagacggcaccggtcgatctctccactcaagagcagccggac
gtcggtgtcgaagtgcctgcagcggaagccgcgccagaggtagaaactgctgctgtagcc
gagacggtcgaggccgttgcggacgttgctgaggaagcacctgccaagaaggcaaggcca
cgccgcagccgcaagaaggcagcgccggttgccgaagtgccggcaagcgatgaggctgcc
agcgaagccacggtcgacaacgatgacgaaggctcgccgggcaacgagatggcagcgatg
gtcgagacggactcgatctccgaagaggtcgacgcccgccgccgcagcgatgacgacgat
gacgatgatcacgaccacgaagaggaagtgatcgaatccgttggcgctgaagacgccatg
gaggaagttcccgatcgcgtccagcgcaagccgcgcaagcagtatcgcatccaggaagtc
atcaagcgccgccagatcctgctggtgcaggtggcaaaggaagagcgcggcaataagggc
gcggccctgaccacctatctttcgctggccggccgttattccgtcctcatgccgaacacg
gcgcgtggcggcggcatttcccgcaagatcaccaatccgcaggaccgcaagcgcctgaag
gaaatcgcacggatgctcgaagtgccgcagggcatgggcgtcatcttgcgcacggccggt
gcaaaccggaccaaggtcgaggtcaagcgagacttcgaatacctaatgcgcctgtgggag
aacgtgcgcacgctgacgctgcagtcgaccgctccctgcctcgtctacgaggaaggctcg
ctcatcaagcgctcgatccgcgacctctacaacaaggacatcggcgagatcatcgtctcc
ggcgaggaaggctatcgtgaagcgaaagacttcatgaagatgctgatgccgagccatgcc
aaggtggtccagccctaccgcgacattcacccgatcttctcgcgctccggcatcgaagct
cagctcgaccgcatgctgcagccgcaggtgaccttgaagtccggcggctacctgatcatg
aaccagacggaagcgctggtttccatcgacgtcaactccggccgttcgacccgcgagcac
tcgatcgaggacaccgcgctgcagacgaacctcgaggccgccgatgaagtggcccgccag
cttcgcctgcgcgaccttgccggcctcatcgtcatcgacttcatcgacatggaagagaag
cgcaacaaccgcgcggtcgagaagaagctgaaggaatgcctgaagaacgaccgcgcccgc
atccaggtcggccgcatctcgcatttcggcctgctcgaaatgtcgcgccagcgtatccgc
gcttccgttcttgaatcgacgacccaggtctgctcgcattgcggcggcaccggccacgtg
cgttcgcagtcctccgttgccctgcacgtcctgcgcggcatcgaggagtacctgctcaag
aacaccacgcataacatcacggttcgcacgacgcctgatattgcgctgtacctgctcaac
cacaagcggcagacgatcctcgactacgaagcccgcttcggtgttgcgatcattatcgac
gcagacggctccgtcggctcacagcacttcgcgatcgaccgcggcgagccggtcgagaat
ccagtcaagatcgaaagcctgttcaactttgccgccatccccgatgacgaagacgacgat
atcgtggtcgaagtcgatgaggaggaagaagaggaactggaggccaagccggctgcttcc
gaacgtccggcgccgagcgccgaaagcgatggagaaggccgcaagcgcaagcgccgccgt
cgtcgtcggggccgcaatggcaacggcgagccggttgccgccgacagcagctctgccgac
gctgaggaaggcgaccagaccgacggtgacgacgaggatgaaggcgacgaaagcgttgct
gccacctcggacacgcgtgacgaaggtgatgagacccaacgccgcaagcgccgccgtcgt
ggcaagcgcggcggccgccgcaaccgcgaggaaggcggcgagcaggaggcttccgaagcc
gaactggcaagtgacggcgctgaagatggcgagacagacgtgaccgctgtcgacgcgatc
gaagctgccgccgaagaagcagtcgaagctcagccggcgatggcagcggtcgagaccggt
gctactgtgacggaagacgtgaagccgaggcgcgcacgtcgtagccgcaaggcatcgccg
gtcgaggagcctgtcgtggaagaggcagcggccgaagtggtcccggccgtagacgctgaa
gctgaggcggcagccgcagacctcgcgacgccggcccccgaagatgcaaagcctgtccgc
gccaacagggagtcgaacatctcctcgtctgaaccgacggtgaagtcgacgcgcagcgat
gccgccgagagcgagggcgacggtaagccgaagaaagctggctggtggcagcgccgcggt
tttttctga
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