Cereibacter sphaeroides ATCC 17025: Rsph17025_0716
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Entry
Rsph17025_0716 CDS
T00512
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rsq
Cereibacter sphaeroides ATCC 17025
Pathway
rsq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rsph17025_0716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsq03019
]
Rsph17025_0716
03009 Ribosome biogenesis [BR:
rsq03009
]
Rsph17025_0716
Enzymes [BR:
rsq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Rsph17025_0716
Messenger RNA biogenesis [BR:
rsq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rsph17025_0716
Ribosome biogenesis [BR:
rsq03009
]
Prokaryotic type
rRNA processing factors
Rsph17025_0716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ABP69622
UniProt:
A4WQF8
LinkDB
All DBs
Position
725871..728480
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AA seq
869 aa
AA seq
DB search
MAKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPVADRKALIEEERAYARAEEDEDHGRSRRRSRPAPAEAP
SADAVQSGDVGGMDVVDLGEETGADALYETERGEARPEADEAEKPWKAVDHAAETDDEIE
SVADEDVAEEIPAPRKPRQRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRY
CVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQEIRRDYE
YLLRLWEQIRELTLKSVAPAPIYEEGDLIKRSIRDLFNREIEEVLVEGETGYRTAKDFMR
MIMPAHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEALVAIDVNS
GRATKEGSIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKRLKDK
LKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSLALQVLRQ
LEEEGTRKRSKEVLLRAPIAVVNFLMNQKREHIAMIEARYGMAVRVEADPSLSSPDYVIE
KFKTATRVVPETVKVISGSADLMGAPVDEPEDDWIEEEPEVEEAEEAVEAAEPAEAAPSE
GQPKKKRRRRRRRRNGANGATDQTGAEAAESDESDDSDEDEDETADEGDVPEPAAFVPEM
APEAVIAEPAAEPVAEPVAEPEAVAEEPPAPRKRTRVRKPKVVEESAAAPAEAAPEAEPK
EPKKPSRSRTSRSRKSAAAAEEAAPAVEVAVTVDEAPAEAALDVVETPAEPAPAAPQPEA
APEPQPEPVSGETDEESKPRRRGWWSISR
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaaaatgcttatcgatgccacccacccggaggagacccgggtcgtggtggtg
gacggaaacaaggtcgaggagttcgacttcgagaccgtcaacaaacggcagcttgccggc
aacatctatctcgccaaggtaacgcgggtcgaaccttcgcttcaggcggccttcgtcgat
tacggcggcaaccggcacggctttctggccttcgccgagatccatcccgattattaccag
atcccggtggccgatcgtaaggccctgatcgaggaagagcgggcctacgcccgcgccgag
gaggatgaggatcacggccgctcgcgccgcaggtcgcggccggccccggccgaggcgccg
tcggcggatgccgtccagtcgggcgatgtgggcggcatggatgtggtcgatctcggtgaa
gagaccggcgccgacgctctctacgagaccgagcgcggggaggcccggcccgaggcggac
gaggccgagaagccctggaaggcggtggatcacgccgccgagaccgacgacgagatcgaa
tccgtcgccgacgaggatgtggccgaggagatcccggccccgaggaagccccgccagcgc
cgctacaagatccaggaagtgatcaaggtgcgccagatcatgctggtgcaggtggtcaag
gaagagcgcggcaacaagggcgcggcgctcacgacctatctcagcctggccggccgctat
tgcgtgctgatgccgaacacggcgcggggcggcgggatcagccgcaagatcacccaggcc
gccgaccgcaagaagctgaaggaaatcgcctcggagcttgaggtgccggaaggcgcgggc
ctcatcatccgcaccgccggcgccaagcgcaccaagcaggagatccggcgcgactacgaa
tatctccttcgcctgtgggagcagatccgcgaactcacgctgaagtcggtcgccccggcg
ccgatctacgaggagggcgacctgatcaagcggtcgatccgcgacctcttcaaccgcgag
atcgaggaagtgctggtcgagggcgagacgggctaccgcaccgccaaggacttcatgcgg
atgatcatgccggcccacgcccggcaggtgatccgctacgatgagccgatgccgctgttt
gcgcgctatcaggtggaaagctacctctcgggcatgttcaacccggtggtgcagctgaaa
tccggcggttacatcgtcatcggcgtgaccgaggcgctggtcgccatcgacgtgaactcc
ggccgggccaccaaggaaggctcgatcgaggacacggcgctcaagaccaacctcgaggcc
gccgaagaggtggcgcgccagctgcgcctgcgtgaccttgccgggctgatcgtcatcgac
ttcatcgacatggaagagcggaagaacaacgccgccgtcgagaagcgcctgaaggacaag
ctgaagaccgaccgcgcgcggatccaggtcggccgcatctcgggcttcggcctgatggag
atgagccgccagcgcctgcgtccggggatgctcgaatcgaccacgcagccctgcgcgcat
tgccacggcaccggcctgatccgctcggacgacagcctcgcgctgcaggtgctgcgccag
ctggaagaagagggcacgcggaaacgctcgaaggaggtgctgctgcgcgccccgatcgcg
gtcgtcaacttcctgatgaaccagaagcgcgagcatatcgcgatgatcgaggcccgctat
ggcatggcggtgcgggtcgaggccgatccttcgctgtccagcccggactatgtgatcgag
aagttcaagaccgcgacgcgggttgtgcccgagacggtcaaggtgatctcgggcagcgcc
gatctcatgggcgcgccggtggacgagcccgaggacgactggatcgaggaggagcccgag
gtcgaggaggccgaggaagcggtcgaggccgcggaacctgccgaggccgctccctctgaa
ggccagcccaagaaaaagcgccgccgtcgtcgccgccgccgcaatggcgcgaacggtgcc
acggaccagaccggcgccgaggcggccgagagcgacgagtcggacgactcggacgaggat
gaggacgaaaccgccgacgagggcgacgtgccggaaccggcagccttcgtgcccgagatg
gcgcccgaggcggtgatcgcggaacccgcagccgagccggtggccgaacctgtggccgag
cccgaggcggtggccgaagagccgccggccccgcgcaagcgcacccgcgtccgcaagccg
aaggtggtcgaggagagtgcggcggcccccgccgaggccgcgcccgaagccgagccgaag
gagccgaagaagccctcccggagccgcacgagccgcagccgcaagagcgcggcggcagcc
gaggaagccgctcctgcggtcgaggtggcggtgacggtcgatgaagctccggccgaggcc
gcgctcgacgtggtcgagacgccggccgagccggccccggctgccccgcaacccgaggcg
gcccccgagccccagcccgagccggtctcgggcgagacggacgaggagagcaagcccagg
cgccgcggctggtggtcgatcagccgctga
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