Salvelinus sp. IW2-2015 (Arctic char): 111961398
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Entry
111961398 CDS
T05762
Name
(RefSeq) retinoic acid receptor alpha-A isoform X1
KO
K08527
retinoic acid receptor alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111961398
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
salp03310
]
111961398
Transcription factors [BR:
salp03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
111961398
Nuclear receptors [BR:
salp03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
111961398
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GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
111961398
NCBI-ProteinID:
XP_023839397
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Position
LG4q.1:29:complement(9673122..9913809)
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AA seq
558 aa
AA seq
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MNGFVTFILNLLQFLPFCTVYWWQTENHTSAAPIFVCPNRCAQQTFFFSHSPDNNHPAFA
LRTMYESVDVVGLNPSPNPFLMMDYYNQSRGCLIPEKGLVPGAPHHYSTSIRNQHWNGSN
HSIETQSTSSEEIVPSPPSPPPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQK
SMVYTCHREKNCIINKVTRNRCQYCRLQKCLEVGMSKESPRSSSKGGMVLGPQPPPPPLE
TGRGQTGGPGADRAAPPAVRNDRNKKKKDEKKQECPESYVLSIETEQMINRVSKAHKETF
PSLCQLGKYTTSNSSERRVALDVDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQIT
LLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPL
EMDDAETGLLSAICLLCGDRQDLEQADKVDVLQEPLLEALKIYVRKRRPHKPHMFPKMLM
KITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGLESGAAGTRTSGAPPGSCSP
SLSPSSAQSSPSPTTQSP
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgaacggatttgtaacctttattttgaatttattgcagtttttacccttttgcacagtc
tactggtggcaaactgaaaaccacacgtctgctgctcctattttcgtgtgcccaaatcgt
tgcgcacagcagacgttctttttttctcactctccggacaataatcatcccgctttcgct
ctacgtacgatgtatgagagtgtggacgtcgtgggactgaatcccagcccgaacccgttt
ttaatgatggattactacaaccagagcagaggatgtttgatcccagagaaaggacttgtg
cccggagcgccccatcactacagtacgtccatcagaaaccaacactggaacggctcgaat
cactcgatagagacacagagtaccagctcagaggagatagtgccaagcccgccgtcgccc
cctcctcccccgagggtctacaagccctgcttcgtgtgccaggacaaatcctcaggatac
cactatggagtcagtgcctgcgaaggctgcaagggcttctttcggaggagcatccagaag
agcatggtgtatacgtgtcaccgggagaagaactgcatcatcaacaaggtcaccaggaac
cgctgccagtactgccggctgcagaagtgcttggaagtgggcatgtccaaggagtctcct
cgctccagctccaaaggcgggatggtgttgggcccccagccgccgcccccaccattggag
accgggaggggacagactggggggccaggggcggacagggcagctcccccggcggtgagg
aatgaccggaacaagaagaagaaggatgagaagaagcaggagtgcccggagagctacgtg
ctgagcattgagacggagcagatgatcaatagggtcagcaaggcgcataaggagaccttc
ccttcgctctgccagctgggcaaatacaccacgagtaacagctcggagcggcgtgtggct
ctggacgtggacctgtgggacaagttcagtgagctgtccaccaagtgtatcatcaagacg
gtggagttcgccaagcagcttcctggcttcaccacgctcaccatcgctgaccagatcacc
ctsctcaaggccgcctgtctggacatactgattctgcggatctgcacgcgctacacgccg
gagcaggacaccatgacgttctcggatggcctgacgctaaaccggacccagatgcacaat
gccggcttcggacctctcaccgacctggtgttcgccttcgccaaccagctcctccccytg
gagatggatgatgctgagacgggactgctcagcgccatctgtctgctgtgtggagatcgg
caggacctggagcaggcagacaaggtggacgtactacaggagcccctactggaggcgctg
aagatctacgtgaggaagaggaggcctcacaaaccgcacatgttccccaagatgctgatg
aagatcaccgacctgaggagcattagcgccaaaggagcygagcgtgtcatcaccctgaag
atggagatcccgggctccatgccccctctcatccaggagatgctggagaactctgagggt
ctggagagcggggccgcgggcacccggaccagcggagcccccccgggcagctgcagcccc
agcctgtcccccagctccgcccaaagcagccccagccccaccacacagtcgccgtag
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