Streptomyces cadmiisoli: DN051_25495
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Entry
DN051_25495 CDS
T07301
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
scad
Streptomyces cadmiisoli
Pathway
scad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DN051_25495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scad03019
]
DN051_25495
03009 Ribosome biogenesis [BR:
scad03009
]
DN051_25495
Enzymes [BR:
scad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DN051_25495
Messenger RNA biogenesis [BR:
scad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DN051_25495
Ribosome biogenesis [BR:
scad03009
]
Prokaryotic type
rRNA processing factors
DN051_25495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
AWW39602
UniProt:
A0A2Z4J323
LinkDB
All DBs
Position
5838317..5842405
Genome browser
AA seq
1362 aa
AA seq
DB search
MLEPIESTGPTTGSEPNTPSDTLPPRRRRRAASRPAGPPVAASGTEAETVSPAIPAAETT
DLASGELSQAQAGDAPEAEETAAALTTDETAEIEETEDTEVAAEAEETAPARPRRRATRR
ASAPAGAAAAEAAESVVPVTAPAAAPALSAEDAAPAEAAEEAAPPRQRRRATRRVSAPTA
TVETGGTAAETVVPAAAPSAGSDSEPEAAEPAAEEAAPVRTRRRATRRVSAPVAAPAAET
VEESAPQAETPAPAEDTEAAEDTAPRRTRRRAVRRATAPAGEPEAGEPAAEVPAGPETPA
AVEVPVTAAPAAEAPETTDDLGGEGAAPRRARRRAVRKAATGFAAPAQSQRAAGTEDEGD
GPRRPARPAVAVFQAPVFTEPKFQTPERAAAEAAAEALEETPEAEETTEEQAGARRRRRR
RSADEPATQAAAVAAEDESEDAEDAADDSAETEEGEETGSRRRRRRGGRRRRRGESGDGE
SAETEDGETEDLAGEQAAQDAEDTAEQDAEDAEDAEEDDRGGESAGSSSSSRRRRRRRRR
AGDSGTDGEPSDDDPERTVVKVREPRKQSEPSDEVQSIKGSTRLEAKKQRRREGREQGRR
RVPIITEAEFLARREAVERVMVVRQYGDRTQIGVMEDGVLVEHYVNKEQSTSYVGNVYLG
KVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQSVLVQVTKD
PIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVR
TAAEGASEDELRRDVERLQAQWEDIRKKSKSGNAPTLLYGEPDMTVRVVRDIFNEDFTKV
IVSGDEAWKTVHGYVSHVAPDLADRLQRWTSEVDVFATYRIDEQLAKALDRKVWLPSGGS
LVIDRTEAMVVIDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFID
MVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNG
RGVIVHLDHAAVSGGGGKRKKRARAGAEQPEHTHEAVAVETAEQEAETEAEVAAGAAEPI
ALPAPEFAPDEELYSSVAEAEAAASRGRSRRRSGRRVSAPAGAPRGETDGVVVQTPAART
VTAEEESARPPRVESAAEAHAEPVAVEDPVVQAAPAAEEAAPQGRTRRRATRKVSAPAGA
PSSSAESAVVTVAGTAPEAEQTPAEAPVAPAGAATEPAAAAPPRARRRAVRKATAPTASE
ETAVVVVPAAAELAEAGTGSDGAEAEAVEAAPAKKTARKTAKKATAKKAATKKTAAKKTV
AKKTTAKKAAKTTAKTAAKSVSKKTAAAQQTLSSVTATADEG
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagccgatcgaatccaccgggcccaccacgggctccgaaccgaacacccccagc
gacaccctgccgccgcgtcgtcggcgccgtgccgcttcccgcccggcgggaccccccgtc
gccgcctccggcaccgaggcggagaccgtctcgccggccataccggccgccgagaccacc
gacctcgcctccggggagctgtcccaggcgcaggccggggacgcgccggaggccgaagag
accgccgcggccctgacgacggacgaaaccgcggagatcgaagagaccgaggacaccgag
gtggccgcggaggccgaggagacggcgcccgcccgtccgcgccggcgcgccacccgccgg
gcctccgcgcccgcgggagccgccgccgcggaggccgccgagagcgtcgtgccggtgacc
gcaccggccgcggccccggccctgtccgccgaggacgccgcgcccgcggaggccgccgag
gaggccgccccgccgcgtcagcgccgtcgtgccacgcgccgggtgtcggccccgaccgcc
accgtggagaccggcgggaccgccgccgagaccgtcgtgcccgccgccgccccgtccgcc
gggagcgacagcgagcccgaggccgccgagcccgccgccgaggaggccgcgcccgttcgt
acgcgccgtcgtgcgacgcgtcgggtgtccgcgccggtcgcggcccccgccgccgagacc
gttgaggagtccgcgccgcaggccgagaccccggcgcccgcggaggacaccgaggccgcc
gaggacaccgccccgcgccgtacccgccgccgggccgtgcgccgggcgaccgcgccggcc
ggtgagcccgaggccggtgagcccgccgccgaggtccccgccgggcccgagacgcccgcg
gccgtagaggtgccggtgaccgccgcacccgccgccgaggcccccgagaccaccgacgac
ctgggcggcgagggcgccgctccgcgtcgtgcccggcgccgggcggtccgcaaggccgcc
accgggttcgccgcgcccgcgcagtcgcagcgcgccgccgggaccgaggacgagggcgac
gggccgcgccggcccgcgcggcccgcggtcgccgtgttccaggcccccgtgttcaccgag
ccgaagttccagacgcccgagcgggccgccgccgaagcggccgccgaggccttggaggag
acccccgaggccgaggagacgaccgaggagcaggccggggcgcgccgtcgccgccgccgt
cgctccgccgacgagcccgcgacgcaggccgccgccgtcgccgccgaggacgagtcggag
gacgcagaggacgccgcggacgactccgccgagaccgaggagggcgaggagacgggatcc
cgtcgccgtcgccgtcggggcggccgtcgccgccgtcgcggtgagtccggtgacggcgag
tccgccgagaccgaggacggcgagaccgaggacctggccggcgagcaggccgcccaggac
gccgaggacaccgccgagcaggacgcggaggacgccgaggacgccgaggaggacgaccgc
ggcggcgagtccgcgggctcgtcctccagcagccgtcgccgccgtcgccgtcgccgtcgc
gccggtgactccggcaccgacggcgagccgtccgacgacgaccccgagcgcaccgtcgtc
aaggtccgcgagccgcgcaagcagtccgagccgtccgacgaggtgcagtccatcaagggc
tcgacccgtctggaggcgaagaagcagcgccgccgcgagggccgcgagcagggccgccgc
cgcgttccgatcatcaccgaggcggagttcctcgcccggcgcgaggccgtcgagcgcgtg
atggtcgtccgccagtacggcgaccggacgcagatcggcgtcatggaggacggggtgctc
gtcgagcactacgtcaacaaggagcagtcgacctcgtacgtcggcaacgtctacctcggc
aaggtgcagaacgtcctgccgtcgatggaggccgccttcatcgacatcggcaagggccgc
aacgccgtcctgtacgcgggcgaggtcaacttcgaggcgctgggcatggccaacgggccg
cgtcgcatcgagtccgcgctgaagtccgggcagtccgtgctcgtgcaggtcaccaaggac
ccgatcggccacaagggcgcccgcctgaccagccaggtctccctccccgggcgctacctc
gtgtacgtccccgagggctcgatgaccggcatcagccgcaagctgcccgacaccgagcgg
gcccggctgaagacgatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgc
accgccgccgagggcgcgagcgaggacgagctgcgccgcgacgtcgagcggctccaggcg
cagtgggaggacatccggaagaagtccaagagcggcaacgcgccgactctgctgtacggc
gagccggacatgaccgtccgcgtcgtgcgcgacatcttcaacgaggacttcaccaaggtc
atcgtcagcggtgacgaggcctggaagaccgtgcacggctatgtgtcgcacgtggccccc
gacctcgccgaccgcctccagcggtggacctccgaggtcgacgtgttcgccacgtaccgg
atcgacgagcagctcgccaaggcgctggaccgcaaggtctggctgcccagcggcggttcg
ctggtgatcgaccggaccgaggcgatggtcgtcatcgacgtcaacaccggcaagttcacc
ggtcagggcggcaacctcgaggagaccgtcaccaggaacaacctggaggcggccgaggag
atcgtccggcagctgcggctgcgcgacctcggcggcatcatcgtcatcgacttcatcgac
atggtgctggagtccaaccgcgacctggtgctgcgccggctgctggagtgcctgggccgg
gaccggaccaagcaccaggtggcggaggtgacctcgctcgggctcgtgcagatgacccgc
aagcgggtcggccagggtctgctggagtcgttctccgagacctgcgtccactgcaacggc
cgcggcgtcatcgtgcacctcgaccacgccgccgtctccggtggcggcggcaagcgcaag
aagcgcgcgcgggccggtgccgagcagccggagcacacgcacgaggcggtcgccgtcgag
acggccgagcaggaggcggagaccgaggccgaggtggccgccggggccgccgagccgatc
gcgctgccggcgcccgagttcgcaccggacgaggagctgtacagcagcgtcgccgaggcg
gaggcggcggcttcccggggccgttcgcggcgccggtccggccgtcgggtgtcggctccg
gccggtgcgccccgcggcgagacggacggcgtggtcgtccagacgcccgcggctcggacg
gtgacggccgaggaggagagcgcgcgtccgccgcgagtggagtccgccgccgaggcgcac
gccgagcccgtggccgtcgaggaccccgtcgtccaggccgctccggccgccgaggaggcc
gcgccccagggccgtacccgtcgccgggccacccgcaaggtgtccgcgccggccggtgcg
ccgtcgtcgtcggccgagtcggccgtggtgacggtcgccgggaccgcgccggaggcggag
cagacgccggccgaggcgcccgtcgcgccggccggggcagcgaccgagccggccgccgcc
gcaccgccgcgtgcgcggcgccgcgcggtgcgcaaggccaccgcgccgaccgcgtccgag
gagacggccgtcgtggtcgtccccgcggcggcggagctcgcggaggccggtaccgggtcg
gacggggcggaggccgaggccgtcgaggcggcgccggccaagaagacggcccgcaagacg
gccaagaaggcgaccgcgaagaaggccgccaccaagaagaccgcggccaagaagacggtc
gccaagaagacgacggccaagaaggcggcgaagaccaccgccaagacggccgccaagtcg
gtgtcgaagaagacggcggcggcgcagcagacgctgtcgtccgtcaccgcgaccgccgac
gagggctga
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