Streptomyces ficellus: EIZ62_22235
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Entry
EIZ62_22235 CDS
T06929
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sfic
Streptomyces ficellus
Pathway
sfic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EIZ62_22235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfic03019
]
EIZ62_22235
03009 Ribosome biogenesis [BR:
sfic03009
]
EIZ62_22235
Enzymes [BR:
sfic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EIZ62_22235
Messenger RNA biogenesis [BR:
sfic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EIZ62_22235
Ribosome biogenesis [BR:
sfic03009
]
Prokaryotic type
rRNA processing factors
EIZ62_22235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QGV80649
UniProt:
A0A6I6FN97
LinkDB
All DBs
Position
4933101..4937174
Genome browser
AA seq
1357 aa
AA seq
DB search
MLEPNETGTAGNHNEENSSPSDTLPPRRRRRAASRPAGPPVTAGAGDTPAGEVVVETPAA
EVADVASLAEAPNEAAEPAPARPRRRATRKATAPAGAPQAAETAEAPAASAPEAQPEAEA
PAAPARRRATRKATAPATAPQPMEAAEAQPEAEAPAAPARRRATRKATAPAGAPQAAEAP
EASAPEAQPEAPAAPARRRATRKATAPAAAPQAAEEPQAAQAPVVAAPAADAPATEDAEA
APRRTRRRATRKATAPAGAPQAQAPAEDETDTAEGGESLPAATVAQISSDEAGAEVAAAE
EAATRGRTRRRAAAPQFTAEPAKKPEQSRGRRAARPAVPVFQAPVFTEPMFQTPETAAAA
AAAEAAGTEEAPEVTETPAAPAPAEAAAEQPETGGRRRRRRRGEPAEPAAEAEPTRTAPA
AAPEPEAEAETDADAEAEAGEGEETDEFGDRPSRRRRRGGRRRRRGDATEAEEAEEAARA
EEEADGDEADEDQDEADEHEGGTPSAAGTSSSRRRRRRRRRSGDSGAEGESAGEEDGVRT
VVKVREPRPAREKAEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARRE
AVERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVD
IGKGRNAVLYAGEVNFEALGMANGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSL
PGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDV
ERLQAQWEDIQKKAKSGNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWKTIHGYV
SHVAPDLADRLQRWTSETDVFATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVN
TGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLL
ECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPASAGG
GGNGGKRAKKRARAAEAELETAGTETAVTETETETEAELAAEVAPPVAVEEEFRPDEELY
SSVAEAEAAAGRGRSRRRASRKASAPAGAPRAAAEPEQRPGVAEVAPEAIEVEALPALAT
ATAPEAATAETATAPEAAEVTEAPKGRTRRRATRKATSPAGPPKPVAAEEEPAPATAPAQ
PEPVQAEPVPAEAPVQEQQPEPQPAAEEAPVAAPPRARRRVVRKVTAPAASPAGAAEAAV
IVVSSGTQAEEPAPAPDAEAAGTEAEATEAPAKKTAARKTAKKATAKKAATKKTAAKKTT
AAKKTTAKKTATKTAAKTAKTAKTAKSASKETVTAEQ
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagccgaacgaaaccggcaccgccggtaaccacaacgaagagaacagctcgccc
agcgacacgctgcctccgcgccgccgtcgccgggccgcgtcgcgtcccgcgggaccgccg
gtcacggcgggcgccggggacacgcccgccggcgaggtcgtcgtcgagacgcccgccgcc
gaggtggccgacgtggcctccctcgccgaggcgccgaacgaggcggccgagcccgctccg
gcccgcccgcgtcgccgcgccacccgcaaggcgaccgccccggcgggcgccccgcaggcc
gccgagaccgcggaggctcctgcggcttccgcgccggaggctcagcccgaggcggaggcg
cccgccgccccggcccgccgccgtgccacccgcaaggcgaccgcccctgcgaccgccccg
cagcccatggaggccgcggaggctcagcccgaggcggaggcgcccgccgccccggcccgc
cgccgtgccacccgcaaggcgaccgccccggccggtgccccgcaggccgccgaggctccc
gaggcgtccgcaccggaggcccagccggaggcgcccgccgccccggcgcgtcgccgtgcc
acccgtaaggccaccgctccggcggccgccccgcaggccgccgaggagccgcaggccgcc
caggccccggtcgtcgccgccccggctgccgacgccccggccaccgaggatgccgaggcc
gcgccgcgccgcacccgccgccgcgccacccgcaaggccaccgccccggccggcgccccg
caggcgcaggccccggcggaggacgagacggacaccgccgaaggcggcgagagcctgccg
gccgccaccgtcgcgcagatctcctccgacgaggcgggcgccgaggtcgccgccgccgag
gaggccgccacccgcggccgtacgcgccgccgggccgccgccccgcagttcaccgccgag
ccggcgaagaagcccgagcagtcccgcggccgccgggccgcgcgcccggccgtgccggtc
ttccaggccccggtcttcaccgagccgatgttccagaccccggagaccgccgccgccgcg
gccgccgccgaggccgccgggacggaggaggccccggaggtcaccgagacccccgccgcc
cccgcacccgccgaggccgccgccgagcagcccgagacgggtggccgtcgccgccgccgt
cgccgtggcgagccggccgagccggccgccgaggccgagccgacccgtaccgcccccgcg
gccgctcccgagccggaggcggaggccgagaccgacgcggacgccgaggcggaggccggc
gagggcgaggagaccgacgagttcggtgaccgcccctcgcgccgtcgccgccggggcggc
cgccgccgtcgccgtggtgacgccaccgaggcggaggaggccgaggaggccgcccgcgcc
gaggaggaggccgacggggacgaggcggacgaggaccaggacgaggccgacgagcacgag
ggcggcaccccgtccgcggccggcaccagcagctcgcgccgtcgccgtcgccggcgccgc
cgcagcggtgactcgggcgccgagggcgagagcgcgggcgaggaggacggcgtccgtacg
gtcgtcaaggtccgcgagccgcgtcccgcccgcgagaaggccgagccgtccgacgaggtg
cagtccatcaagggctcgacccgcctggaggcgaagaagcagcgccgccgcgagggccgc
gagcagggccgccgccgggtgccgatcatcaccgaggcggagttcctggcgcgccgcgag
gccgtcgagcgcgtgatggtcgtccgccagagcggcgagcgcacccagatcggcgtcctc
gaggacaacgtgctcgtcgagcactacgtcaacaaggagcaggccaccagctacgtcggc
aacgtctacctgggcaaggtccagaacgtgctgccgtccatggaggccgccttcgtcgac
atcggcaagggccgcaacgccgtcctgtacgccggtgaggtcaacttcgaggcgctcggc
atggccaacgggccgcgccgcatcgagaccgcgctcaagtccggccagtccgtcctcgtc
caggtgacgaaggacccgatcggccacaagggcgcccgcctcaccagccaggtctcgctg
cccggccgctacctggtctacgtgcccgagggctcgatgaccggcatcagccgcaagctg
cccgacaccgagcgcgcccggctgaagaccatcctcaagaagatcgtccccgaggacgcg
ggcgtcatcgtgcgcaccgccgccgagggcgcgagcgaggacgagctgcgccgtgacgtc
gagcggctccaggcgcagtgggaggacatccagaagaaggcgaagagcggcaacgccccg
accctcctctacggtgagcccgacatgaccgtccgggtcgtccgcgacatcttcaacgag
gacttctcgaaggtgatcgtcagcggcgacgaggcgtggaagaccatccacgggtacgtg
tcgcacgtcgcgcccgacctggcggaccgcctccagcgctggacctcggagaccgacgtc
ttcgcgacgtaccggatcgacgagcagctgatgaaggcgctggaccgcaaggtctggctg
ccgtcgggcggttcgctggtgatcgacaagaccgaggcgatgatcgtcgtcgacgtcaac
accggcaagttcaccggccagggcggcaacctggaggagaccgtcaccaggaacaacctg
gaggcggccgaggagatcgtgcgccagctgcggctgcgcgacctcggtggcatcgtcgtc
atcgacttcatcgacatggtgctggagtccaaccgggacctggtgctgcggcgcctgctg
gagtgcctgggccgggaccgtacgaagcaccaggtcgccgaggtcacctcgctgggcctg
gtgcagatgacccgcaagcgggtgggccagggcctgctggagtccttctccgagacctgc
gtccactgcaacggccgtggcgtcatcgtgcacatggagcagccggcctccgccggcggc
ggtggcaacggcggcaagcgtgccaagaagagggcgcgcgccgccgaggccgagctggag
acggccggcaccgagacggcagttaccgagacggagaccgagaccgaggccgagctcgcg
gcggaggtcgctccgccggtggcggtcgaggaggagttccgtccggacgaggagctgtac
tccagcgtcgccgaggccgaggcggccgcgggccgtggccgttcgcgccgccgggcgtcc
cgcaaggcgtcggccccggccggtgcgcccagggcggccgccgagcccgagcagcggccg
ggcgtcgccgaagtggcgcccgaggccatcgaggtggaggccctcccggcgctcgccacg
gccaccgctcccgaggcggccaccgccgagacggccaccgctcctgaggcggccgaggtc
accgaggccccgaagggccgcacccgtcgccgcgccacccgcaaggcgacctccccggcc
ggcccgccgaagccggtggccgccgaggaggagcccgcgcccgcgaccgccccggcccag
ccggagccggtccaggccgagcccgtaccggccgaggcgcccgtgcaggagcagcagccg
gagccgcagccggccgccgaggaggcccccgtggccgccccgccgcgggcgcgccgccgg
gtggtccgcaaggtcaccgcgccggccgcttcccccgcgggcgccgcggaagccgcggtc
atcgtggtgagcagcggcacgcaggcggaggagcccgcaccggcaccggacgccgaggcg
gccgggaccgaggccgaggccaccgaggcaccggccaagaagaccgcggcgcgcaagacg
gccaagaaggccacggcgaagaaggcggccaccaagaagacggccgccaagaagacgacc
gcggcgaagaagacgaccgccaagaagacggccaccaagacggcggcaaagacggcgaaa
acggcgaagaccgccaagtcggcgtcgaaggagaccgtcacggccgagcagtag
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