Sphingobium sp. EP60837: EP837_01882
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Entry
EP837_01882 CDS
T04432
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sphb
Sphingobium sp. EP60837
Pathway
sphb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP837_01882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphb03019
]
EP837_01882
03009 Ribosome biogenesis [BR:
sphb03009
]
EP837_01882
Enzymes [BR:
sphb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EP837_01882
Messenger RNA biogenesis [BR:
sphb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EP837_01882
Ribosome biogenesis [BR:
sphb03009
]
Prokaryotic type
rRNA processing factors
EP837_01882
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ANI78294
UniProt:
A0A173KX25
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All DBs
Position
1:complement(1925530..1928196)
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AA seq
888 aa
AA seq
DB search
MTMRMLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPREDREALLREERAHAEEEAALRADYDDEDDHHGEDGVE
VVEATHHEDEEGEAAESSEGADKPGRRKRGGDDAADELRRKRMALRRRYKIQDVIKRRQV
LLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKSIIAEM
ALPSSMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLKSAAPALIHNDSDLIKRAI
RDIYNKDIDEVIVEGEEGYRAAKDFMKLLMPSHARRVQQYADAVSLFQRAGVEDQLAAMY
NPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIARQLRLRDM
AGLVVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSRQRLRTGVLEA
STRQCPHCEGTGLVRTASSAGLGALRMLEEEAARGRGSLVTLRASQEAAFYVLNNKRAEL
DEIEQRYGVRIAILPDGEVEGARMSVEASGPRPERVVTYAPLVEEEDDLDIVEELEEEEI
EEVEAAERDERGDRGEDREGGRRRRRRRRRRGGQREEHRAEGEAEAAAEGESEEGEDAEA
IVEEAGEHPVEANAESEEASRRRGRRGRRGGRRRREGGEGGAEEAAAEAAEAAPEAAESV
AAEPAVEAPVEAAPEAPAEEAPKTRRRPRTRKVKEAVEAPVEVVEAAVEAPAEEAPAKPK
RTRKKKADVAAEAPAEAPAGVEAETEAPAKPKRTRRKKADAMAQEAAEAPSIAESVAAQA
ATEAEAGAEPVGANDSGAAMLDDASAAASQAEEESAPRRGWWQRTFGQ
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgcgtatgctgatcgatgcgcgccaccgggaagaaacccgggtcgcggtcgtc
aagggaaatcggatcgaggaatttgatttcgagtccgccgagcacaagcagctcaagggc
aatatctatctcgccaaggttacccgtgtagaaccctcgctgcaggcggccttcgtcgat
tatggcggcaaccgccacggcttcctcgctttcagcgaaatccaccccgattattaccag
attccgcgcgaagaccgcgaggcgctgctgcgcgaagaacgcgcgcatgcggaggaagag
gccgctctgcgcgcagactatgatgacgaggatgatcatcatggcgaggacggcgtcgaa
gtcgtcgaagccacgcatcatgaggatgaagaaggcgaagccgccgaaagcagcgaaggc
gcggacaagcccggccgccgcaagcgcggtggcgacgatgctgccgatgaactgcgccgc
aagcgcatggcgctccgccgccgctacaagatccaggacgtcatcaagcgccgccaggtg
ctgttggttcaggtcgtcaaggaagagcgcggcaacaagggcgcggcgctgaccacctat
ctctcactcgccggccgctattgcgtgctgatgcccaacaccagccatggcggcggcatt
tcgcgcaagatttcgaacgccgccgaccgtaagcggctgaagtcgatcatcgcggaaatg
gcactgccctcttccatgggctgcatcgtccgcaccgccgggctgcagcgcaccaagccg
gagatcaagcgcgacttcgactatctcgcccgcctgtgggacgaaatccgcgaaaagacg
ctgaagtcggccgcgcccgcgctgatccacaatgacagcgacctcatcaagcgtgcgatc
cgcgatatctacaacaaggatatcgacgaggtcatcgtcgaaggcgaggaaggctatcgc
gccgccaaggacttcatgaaactgttgatgcccagccacgcgcggcgggtgcagcaatat
gccgatgcggtgtcgctgttccagcgcgcaggcgtcgaggatcagctggcggcgatgtac
aaccccgtcgtgcagctgaagtcgggcggctatctggtcatcaacccgaccgaagcgctg
gtatcgatcgacatcaactccggccgttcgacccgcgagcatggcatcgagcagaccgcc
gtcgctacgaatttggaagccgcacgcgaaatcgcccgccaactgcgcctgcgcgacatg
gcgggcctggtcgtgatcgacttcatcgacatggagatgaactccaacatccgtaaggtc
gaaaaggcgatgaaggaggcgctgaaggacgatcgcgcccgcatccaagttggccgcatc
tccggctttggcctcatggaaatgagccgccagcggctgcgcaccggcgtgctggaagca
tcgacccgccagtgcccgcattgcgaaggcaccggccttgtccgcaccgcttcgtcggcg
ggccttggcgcgctgcgcatgctggaagaggaagccgcgcgtggccgtggcagcctggtc
acgctgcgcgccagccaggaagccgccttctacgtcctcaacaacaagcgcgccgaactg
gacgagatcgagcagcgctatggcgtgcggatcgcgatcctgcccgatggggaggttgag
ggggcacgcatgtcggtcgaagccagcgggccgcgtccggaacgggtggtgacctatgcc
ccactcgtcgaggaagaagatgacctcgatatcgtcgaggaactggaagaagaagagatc
gaagaggtcgaagccgccgaacgcgacgagcgtggcgatcgtggcgaggatcgcgaaggc
ggccgtcgccgtcgtcgtcgtcgccgtcgccgtggcggacagcgcgaggaacatcgcgca
gagggcgaggctgaagccgccgccgagggtgagagcgaggaaggcgaggacgccgaagcg
atcgtggaagaggccggagagcatccggtcgaggcgaatgctgaaagcgaagaagccagc
cgccgccgtggccgccgtggtcgccgtggtggacgccgtcgtcgcgaaggtggtgaaggc
ggggctgaggaagcggctgcagaagctgcagaagcagcccctgaagcagccgagtccgtc
gcagctgaacctgccgtcgaagcaccggtagaagccgcgccggaagcgcccgctgaggag
gctcccaagacgcgccgccgtccgcgcacgcggaaggtcaaggaagccgtcgaggctcca
gtcgaggtggttgaagctgcagtcgaagcgcctgccgaggaagcgcccgccaagccgaag
cgcacccgcaagaagaaggcggacgttgcggccgaggctcctgccgaggcgcccgcgggc
gtggaagcggagaccgaagcccccgccaagcccaagcgtacccgccgcaagaaggcagac
gccatggcccaggaagcggcagaagcgccttcgatcgctgagtccgtggccgcgcaggcg
gcaaccgaagcggaagctggcgcagagccggtcggcgcaaatgacagcggtgctgctatg
ctcgatgacgcgagcgcagccgcatcacaggccgaagaagaaagcgcgccgcgccgtggc
tggtggcagcggaccttcggccaataa
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