Subtercola endophyticus: LQ955_09010
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Entry
LQ955_09010 CDS
T08409
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
suba
Subtercola endophyticus
Pathway
suba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
suba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQ955_09010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
suba03019
]
LQ955_09010
03009 Ribosome biogenesis [BR:
suba03009
]
LQ955_09010
Enzymes [BR:
suba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LQ955_09010
Messenger RNA biogenesis [BR:
suba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LQ955_09010
Ribosome biogenesis [BR:
suba03009
]
Prokaryotic type
rRNA processing factors
LQ955_09010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
UFS60855
LinkDB
All DBs
Position
complement(1922051..1925182)
Genome browser
AA seq
1043 aa
AA seq
DB search
MVEDSINSEQEPPVKRRSRLFGGRKAARKAAESVAPATPVASAASAPDARVGASGSTSAA
TSAAPLAPSAERQPGAATREGAADTAASLAGTRTTGAGSASVDVKAPVSDFHDSNPPDDN
VSTETTEAEVTEAEATAAAEAPETATAPESDTAPQTTVTRSAFEPSSSDPREPWLEPELG
QPPAAPQPPVARTTTSLLFQAPDIQPLPPRPRGANDRDDDYDSDDRDDDAGNRDTTIRRR
TRRRSGDESRLPDDLPPNTVVKVRAPRQAQAPELITEPQRVKGSTRLEAKKQRRRDGRDA
GRRRPVITEAEFLARRESVDRAMIVRSSHDRIQIGVLEDGVLVEHYVAKAAEASLIGNVY
LGRVQNVLPSMEAAFVDIGRGRNAVLYSGEVDWDAADTGNQPRRIELALKPGDTVLVQVT
KDPVGHKGARLTSQVSLPGRYLVYVPNGNMNGISRKLPDTERSRLKRILKEVLPEKVGVI
VRTAAEGATEEQLTLDVNRLISQWAAISDNVKALSAPALLHGEPDLLIKIIRDVFNEDFH
RLVISGTDARQTIEAYLAQVAPDLVDRIEVFEGQKDIFDEFRISEQIEKALDRKVWLPSG
GSLVIDRTEAMTVVDVNTGKFVGSGGNLEETVTKNNLEAADEVVRQMRLRDIGGIIVVDF
IDMVLESNRDLVLRRLVECLSRDRTKHQVAEVTSLGLVQMTRKKLGLGLLESFSEPCEVC
AGRGVVIHHDPVSKHRTQQQTPQPEQRRSRGKGGASNGGGSGNGNGGPSNGSNGSNGASH
SNGVTHSITPAAQNALAQIAASTIAAANGQKAPAVASASAGQPAADSSIEAGSGSGSASA
GGDSVTVDPTIEATPEVADGGSGRGHTAENDQAGTGESTGQQESSSGSGRSRRGSRRSRG
QRAAANAAAESGALESSTAQHSLEVPAETPELAPRVPETHRDAVSEPEPHGASAPAPAAA
SAEGAEKAGVDAKAEVEAHELPILDLPVAPVTAPRQKREDAAKLLDSVLEHLPEPKQPGQ
GRSRSRRVSTAALSAPVTPPPAD
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggtggaagacagtatcaatagcgagcaagagccaccggtcaaacgacggtcgaggttg
ttcggcgggcgcaaagcggcgcgtaaggcggcagagagcgttgctcctgcgacgcctgtg
gcgtctgctgcaagcgcgccggatgcccgtgtcggcgcctctggctccacctcggcagcg
acatccgctgccccgctcgctccatcagccgaacggcagccgggcgcagccacgcgagag
ggcgcggccgatacggctgcctcgctcgcgggcacgcgcacgaccggtgccggttcggcc
tcagtagatgtgaaggcccccgtgtcagattttcatgattccaacccgcccgacgacaat
gtctcgaccgaaacgaccgaggccgaggtgacagaagccgaggccacagcggctgccgag
gcgcctgagacggccacggcacccgagtcggacacggctcctcagacgaccgtgacccgc
agcgctttcgagccctcgagctccgacccgcgcgagccgtggctcgagcccgaactcggc
cagccgccggcggccccgcagccgcctgtcgcccgcaccaccacgtcgttgctgttccag
gcgcccgacattcagccgctgccgccccgcccgcgcggcgcgaacgatcgtgacgacgac
tacgacagcgacgatcgtgatgacgatgcgggcaaccgcgacacgaccatccgtcgccgc
acccgccgccgcagcggcgacgagagccgcctgcccgacgacctgccgccgaacacggtg
gtcaaggtgcgcgcacctcggcaggcgcaggcccccgaactcatcaccgagccgcagcgt
gtcaagggctcgacccgcctcgaggcgaagaagcagcgtcgccgcgacgggcgtgacgcc
gggcgccggcgccccgtcatcaccgaggccgagttcctggcccgccgcgagtcggtcgat
cgtgccatgatcgtgcgctcgagccacgaccgcatccagatcggcgtgctcgaagacggc
gtgctggtcgagcactacgtggccaaggccgcggaggcctcgctcatcggcaacgtctac
ctcggtcgtgtgcagaacgtgctgccgagcatggaagccgcattcgtcgacatcggccgc
ggccgcaatgccgtgctctactccggcgaggtcgactgggatgcagccgacaccggcaac
cagccccgccgcatcgagctcgccctgaagcccggcgacaccgtgctcgtgcaggtcacg
aaagacccggtcgggcacaagggtgcacgcctcaccagccaggtctcgctgcctggccgc
tacctcgtgtacgtgcccaacggcaacatgaacggcatctcgcgcaagctccccgacacc
gagcgaagccgcctcaagcgcattctcaaagaggtgctgcccgagaaggtcggcgtcatc
gtgcgcaccgccgccgaaggcgccactgaagaacagctcacgctcgacgtcaaccggctc
atcagccagtgggcggcaatcagcgacaacgtgaaggcgctgtcagcgcccgccctgctg
cacggcgagcccgacttgctcatcaagatcattcgcgacgtcttcaacgaagactttcac
cggctggtcatcagcggcacggatgcccggcagaccatcgaggcatacctggcacaggtg
gcccccgacctcgtcgaccgcatcgaggtcttcgagggtcagaaagacatcttcgacgag
ttccgcatcagcgagcagatcgagaaggcgctcgaccgcaaggtctggctgccttctggt
ggatccctcgtcatcgaccgcaccgaggccatgaccgtggtcgacgtgaacacgggcaag
ttcgtcggctccggcggcaacctcgaagagaccgtcacgaagaacaacctcgaggcggcc
gacgaggtcgttcgccagatgcgcctgcgcgacatcggcggcatcatcgtggtcgacttc
atcgacatggtgctcgagagcaaccgcgacctcgtgctgcgccggctcgtcgaatgcctc
agccgtgaccgcaccaagcaccaggtcgccgaggtcacctcgctcggtctcgtgcagatg
acacgcaagaagctgggcctcggcctgctcgagtcgttcagcgagccgtgtgaggtgtgc
gccgggcgcggggtggtcatccatcacgaccccgtctcgaagcaccgcacccagcagcag
acgccgcagcccgaacagcgccgttcgcgcggcaagggcggggcatccaacggcggcggt
agtggcaacggcaacggcggcccgtcgaacggctcgaatgggtcgaacggtgcgtcgcac
agcaacggtgtgactcacagcatcactccggccgctcagaacgccctcgcccagatcgcg
gcgagcaccattgctgccgcgaacggccagaaggcgcccgccgtcgcttcggcatcagcc
gggcagcccgcggccgattcgtcgatcgaggcgggttcgggttcgggatcggcgtcggcc
ggcggcgacagcgtgacggtcgaccccacgatcgaagccacccccgaggtcgccgacggc
ggctcggggcggggccacactgctgagaacgatcaggcaggcacgggcgagagcacgggt
cagcaggagtcgtcatcgggttcagggcgttcacgtcgaggctcgcgccgctcgcgcggt
cagcgtgcagccgccaatgccgccgccgagagtggtgcgctcgagagcagcactgcgcag
cattcgctcgaggtcccggctgagacccccgagctcgccccgcgtgtacccgagacccac
cgcgacgccgtgagcgagccggagcctcacggggcgtctgcacctgcacccgcggctgcg
tctgcggaaggcgccgaaaaggcgggcgtcgatgcgaaggctgaagtggaggcgcacgaa
ctgccgattctcgacctgcccgtcgcgccggtgacggcaccgcgccagaagcgcgaagac
gccgccaagctgctcgactcggtgctcgagcacctgcccgagcccaagcagcccggtcag
ggtcgctcgcgcagtcgtcgcgtctcaacggcggccctcagcgccccagtcactccgccc
cccgccgactga
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