Streptomyces viridifaciens: CP971_22610
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Entry
CP971_22610 CDS
T06960
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
svr
Streptomyces viridifaciens
Pathway
svr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP971_22610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svr03019
]
CP971_22610
03009 Ribosome biogenesis [BR:
svr03009
]
CP971_22610
Enzymes [BR:
svr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CP971_22610
Messenger RNA biogenesis [BR:
svr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CP971_22610
Ribosome biogenesis [BR:
svr03009
]
Prokaryotic type
rRNA processing factors
CP971_22610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
QEV01657
LinkDB
All DBs
Position
5126430..5129954
Genome browser
AA seq
1174 aa
AA seq
DB search
MLDNTDPQQPAATEQNGTAGTGGEGASAAPPRRRRRAVSRPAGTPQGAAAEAAETVVPVE
TTVVPAEAPAETAPAAEKPVRARRTRKRAEAPAGAPEESAIVVTGPEAEVSKTEAPQAEE
KAEKPARARRARKKAEAPVEEPAVEAAAPVEAPAAAEPVAEEAPAAPARRTRRRRVAEAA
PVVEAPVGEPVTTEEPAVEEEAVEAAAEAPAAAEPVAAPAPAPAAEAEPHHRVRRRAVRP
ATAVFQAPVFQEPAPYVAPPTAPQQPAAAPAPVEAPAAAEQRSEEDEYEYSGVGRRRRVR
TRVEPTRRKPAAEAPVKAAAKAPAAKAPVEAPAAEAPAVEAPAAGPETEGEWEEDGRPSR
RRRRGGRRRRRGEAEEFEAAETVEAEQPAVEEPVRAVAEEEDEEDDDDLAAGLSSSRRRR
RRRRRSGESGAVETTETTEDGVRTVVKVREPRRRSTEPSFDPDEVQSIKGSTRLEAKKQR
RREGRELGRRRVPIITEAEFLARRESVERVMVVRQNGQRTQIGVLEDGVLVEHYVNKEQA
TSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFGALGHGGPRRIESVLKSGQ
SVLVQVSKDPIGHKGARLTSQISLPGRYLVYVPEGSMTGISRKLPENERARLKQILKKIV
PDDAGVIVRTAAEGASEEELTRDVQRLQQQWEDIQKKAATGNAPALLYGEPDMTVRVVRD
IFNEDFTKVIVSGDEAWKTIHEYVSNVAPDLAERLQRWTSEVDVFATYRIDEQLMKALDR
KVWLPSGGSLVIDRTEAMVVIDVNTGKFVGQGGNLEETVTRNNIEAAEEIVRQLRLRDLG
GIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESF
SESCVHCNGRGVIVHMEQPSVHVHAPAAAAAEAGPGSGKRRRRGKGGAGHEEPQAVETGS
PVAEAVVEAAVEPAEPVREEIEGQLALEVPGVEAEAVEAPAVGTVVVEAPKAEEAPVAEA
PAAAPAGRPRRRAVRKATAPAGAPQAAEIVVLQAKAEAAMEAALAAAAPAAEAAAEAVAE
AAPEAAPEAAEEAVVAEAVVVEVPAEAEAPAEEAPAEEAPAPKKRAARKTAAKKTAAKKT
TAAAKKTTARKTATKRTSAAAKKAAAAEGDTAAE
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgctcgataacaccgatccgcagcagcctgcggccacggaacagaacggaaccgccggg
accggtggcgagggcgcgtccgccgcgccgccgcgccgtcgtcgccgcgcggtttcccgc
ccggcgggcaccccgcagggtgcggccgccgaggcggccgagacggtcgtcccggtcgag
acgacggtcgttccggccgaggcgcccgccgagaccgccccggccgccgagaagccggtc
cgggcccgccggacccgcaagcgtgccgaggccccggccggtgctcccgaggagagcgcc
atcgtggtcaccgggccggaggccgaggtgtcgaagacggaggcaccgcaggccgaggag
aaggcggagaagcccgctcgggcccgccgggcccgcaagaaggccgaggccccggtcgag
gagcccgcggtcgaggccgccgctcccgtcgaagcccccgccgccgccgagccggtggcc
gaggaggccccggccgccccggcccgccgcacccgccgccgtcgcgtggccgaggccgcg
ccggtggtcgaggccccggtcggggagccggtgaccaccgaggagcccgccgtcgaggag
gaggccgtcgaggccgccgccgaggctccggccgccgccgagccggttgccgcccccgcc
cccgcccccgccgccgaggcggagccgcaccaccgggtgcgccgccgcgccgtccgcccg
gccaccgcggtcttccaggccccggtgttccaggagcccgccccctacgtcgcgccgccc
accgcgccgcagcagcccgccgccgccccggcgccggtggaggccccggccgccgccgag
cagcgctcggaggaggacgagtacgagtacagcggtgtcggccgtcgccgccgggtccgt
acccgggtcgagccgacccgccgcaagccggccgccgaggcgccggtgaaggccgccgcc
aaggccccggcggccaaggcgcccgtggaggctccggccgccgaggcgcccgccgtggag
gcccccgccgccggtccggagaccgagggcgagtgggaggaggacggccgtccgtcgcgc
cgtcgccgccgtggcggccgtcgccgtcgccgtggcgaggccgaggagttcgaggccgcc
gagaccgtcgaggccgagcagcccgccgtcgaggagccggtccgggccgttgccgaggag
gaggacgaggaggacgacgacgacctggccgccggcctgtcctcgtcccgccgtcgccgc
cgccgtcgccgccgcagcggtgagtccggcgccgtcgagaccaccgagaccaccgaggac
ggcgtccgcacggtggtgaaggtgcgcgagccgcgccgccgctccaccgagccgtccttc
gacccggacgaggtgcagtccatcaagggctcgacccgtctggaggcgaagaagcagcgc
cgccgcgagggccgtgagctgggccgccgccgggtgccgatcatcaccgaggccgagttc
ctggcccgccgggagtcggtcgagcgcgtcatggtggtgcgccagaacggccagcgcacc
cagatcggcgtgctggaggacggcgtgctggtcgagcactacgtcaacaaggagcaggcc
acctcgtacgtcggcaacgtctacctgggcaaggtccagaacgtgctgccgtccatggag
gccgcgttcgtcgacatcggcaagggccgcaacgcggtgctgtacgccggtgaggtcaac
ttcggcgcgctgggccacggcggcccgcgccggatcgagtcggtgctgaagtccggccag
tccgtgctggtgcaggtctccaaggacccgatcggccacaagggcgcccgcctgaccagc
cagatctcgctgcccggccgctacctggtgtacgtgcccgagggctcgatgaccggcatc
tcgcgcaagctgcccgagaacgagcgcgcccgcctgaagcagatcctcaagaagatcgtc
ccggacgacgcgggcgtcatcgtgcgcaccgccgccgagggcgcctccgaggaggagctg
acccgcgacgtccagcgcctccagcagcagtgggaggacatccagaagaaggccgcgacc
ggtaacgccccggcgctgctgtacggcgagccggacatgaccgtccgggtcgtgcgcgac
atcttcaacgaggacttcaccaaggtcatcgtctccggtgacgaggcgtggaagaccatc
cacgagtacgtctccaacgtggccccggacctcgccgagcggctccagcggtggacctcc
gaggtggacgtgttcgccacctaccggatcgacgagcagctgatgaaggcgctggaccgc
aaggtctggctgcccagcggcggttcgctggtgatcgaccgcaccgaggcgatggtcgtc
atcgacgtcaacaccgggaagttcgtcggccagggcggcaacctggaggagacggtcacc
cggaacaacatcgaggcggccgaggagatcgtgcgccagctgcggctgcgcgacctcggc
ggcatcatcgtgatcgacttcatcgacatggtcctggagtccaaccgcgacctggtgctg
cgccgcctgctggagtgcctgggccgggaccggaccaagcaccaggtggccgaggtcacc
tcgctgggcctggtccagatgacccgcaagcgggtcggccagggtctgctggagtccttc
tccgagtcctgcgtgcactgcaacggccgcggcgtgatcgtgcacatggagcagccgagc
gtccacgtgcacgccccggcggccgcggccgccgaggcgggcccgggcagcggcaagcgc
cgtcgccggggcaagggcggcgctggccacgaggagccgcaggccgtcgagaccgggtcg
ccggtggccgaggccgtcgtcgaggcggccgtggagcccgccgagccggtgcgcgaggag
atcgagggccagctggccctggaggtcccgggcgtcgaggcggaggccgtcgaggccccg
gccgtcgggaccgtggtggtcgaggcgccgaaggccgaggaggcgccggtggccgaggcc
ccggccgctgctccggccggccgtccgcgccggcgcgcggtgcgcaaggcgacggctccg
gcgggtgcgccgcaggccgccgagatcgtggtgctgcaggcgaaggccgaggctgccatg
gaggcggccctggctgccgccgccccggctgccgaggctgccgccgaggccgtggccgag
gccgcgcccgaagccgcgcccgaagccgccgaggaggccgtcgtcgcggaggccgtggtc
gtcgaggtcccggccgaggcggaggcccctgcggaggaggcgcccgccgaggaggccccg
gcgcccaagaagcgggccgcccgcaagaccgccgcgaagaagaccgcggccaagaagacg
accgcggcggccaagaagaccaccgcccgcaagaccgcgaccaagcggacgagcgcggcg
gccaagaaggccgcggccgccgagggtgatacggcggccgagtag
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