Trichodesmium erythraeum: Tery_0483
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Entry
Tery_0483 CDS
T00387
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ter
Trichodesmium erythraeum
Pathway
ter03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ter00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tery_0483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ter03019
]
Tery_0483
03009 Ribosome biogenesis [BR:
ter03009
]
Tery_0483
Enzymes [BR:
ter01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Tery_0483
Messenger RNA biogenesis [BR:
ter03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Tery_0483
Ribosome biogenesis [BR:
ter03009
]
Prokaryotic type
rRNA processing factors
Tery_0483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DUF6818
Motif
Other DBs
NCBI-ProteinID:
ABG49939
CyanoBase:
Tery_0483
UniProt:
Q118Y5
LinkDB
All DBs
Position
complement(772170..774218)
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AA seq
682 aa
AA seq
DB search
MPKQIIIAEQHRIAAVFSEDQIQELVVAKGSHQVSDIYLGTVENVIPGIDAAFVNIGDPE
RNGFIHVSDLGPLRLKRSSGAITELLTPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYLV
LMPYGRGVNLSRRISSESERNRLRALAILIKPAGMGLLVRTEAEGMEEEAILEDLEVLQQ
QWEIIQIEANSNRAPALLNRDNDFIQRVLRDMYSTDVNRIVVDYSEGVKRVKQHLLNWSG
GKPLQVLIDHHGDRIPILEYFRVNAAIREALRPRVDLPSGGYVIIQPTEALTVIDVNSGS
FTRSATARETVLWTNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFNQVLR
ADKARPQIAQLSELGLVELTRKRQGQNIYELFGRNCPSCNGLGHLVHLPGESEVSIGDVN
LSVVNRNVDAEELTKPVAVTPPTLVGVAQNYSWETRQGYQEGENANNASDLELLNHPSYQ
ETRRRRRRRVGVGETMQDESLELHERELGSGMEYPILSEGYSLTSNTRRSGREIIRPITE
APEIVTVEMTFDEQDVYALMGISPLTLVEEGMVKNPKSVIISIKQPGEGENHLSRTRVDK
EEVEVESVADYEENDDDQELDNFDLSVSSAQDDDFDVREENGNYDLDLSDSDVDLNSDSN
DSDDSGPIRRRRRRSSAVTAEE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagcaaataattatcgctgaacagcacagaattgccgccgtattttctgaagac
caaatacaagaacttgttgttgctaaaggtagccatcaagttagtgatatctatctcgga
accgtagaaaacgtaatacctggaatagatgcagcttttgtcaatattggagatcctgag
cgcaatggatttattcatgtcagtgatttaggcccattgcgattgaaacgatcctctggt
gcaattacagaactacttacaccccaacaaaaagtcttagtgcaagtgatgaaagaaccc
actggtacaaaaggaccacgtttaacaggtaatataaccctaccaggtcgttatttagtt
ttgatgccttatggaaggggtgtaaatctatcaaggcgtattagttctgagagtgaacga
aatcgtcttagagcgttggcaattttaatcaaaccagcaggtatgggcctgttagttcgt
actgaagcagaaggtatggaagaagaggcaattctggaagatttagaggttttgcagcaa
caatgggaaataatccaaattgaagctaattctaacagagctcctgcactactaaatcgt
gataatgattttattcaacgggtactgcgggatatgtatagtactgatgttaatcgaatt
gtagtggactatagtgagggagtgaagcgagtcaagcaacatttgctcaactggagtggg
ggtaaaccattgcaagttttaattgaccatcatggcgatcgcatccctattctagaatac
ttccgggtgaatgctgcgattagagaagctctcagaccaagagtagatttaccttctggt
ggttatgttattatccaaccaactgaagcactaactgttatagatgtcaactctggttct
tttacacggtctgctacagctcgggaaactgtactttggacaaattgtgaagcggctacg
gaaatagcccgtcaactacgcctacgtaacattgcaggagttattattgttgattttatc
gacatggactcacgacgagaccaactgcaagttctggaacattttaatcaagttctcaga
gctgataaagctaggcctcagatagctcagttgtcagaattgggtttagtcgaattgact
cgcaaacgccaaggtcaaaatatatatgagctatttggtcgtaattgtcctagttgtaat
ggattaggacatttagttcatttacctggtgaatctgaagtatctattggggatgttaat
ttgtctgtggttaatcgaaatgtagatgctgaggaattaactaaacctgtagctgttact
cctccaactttggtgggtgtggctcaaaactattcttgggagactagacaaggatatcaa
gaaggggagaatgctaataatgcttctgatttggaattgttgaaccatcctagttaccag
gaaactcgtcgtcgtcgtcgtcgtcgagtaggggttggtgaaacaatgcaggatgagagt
ttggaattgcatgaaagagaattaggatcgggaatggagtatcctatcctttcggaggga
tattctctgacaagtaatacgagacgttcaggaagagagataattagacccattactgaa
gctccagaaatagtaacggtagaaatgacttttgatgaacaagatgtatatgctttgatg
ggtatttctccattaacacttgtagaggagggaatggtaaaaaatcctaaatcagtcatt
atctctattaaacaaccaggggaaggagagaatcatttgagcagaacaagggtagataag
gaagaggttgaagttgaatcagttgcagactatgaggaaaatgatgatgatcaggaatta
gataattttgatttatctgtttcttctgctcaagatgatgattttgatgttcgtgaggaa
aatggtaactatgatttagatttgagtgattcagatgttgatttgaattctgatagtaat
gactctgatgattctgggccaattcgtcgccgtcgtcgtcgttcttcggcagttacagcg
gaagaataa
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