Tsuneonella flava: IDJ81_11410
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Entry
IDJ81_11410 CDS
T07616
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tfv
Tsuneonella flava
Pathway
tfv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IDJ81_11410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfv03019
]
IDJ81_11410
03009 Ribosome biogenesis [BR:
tfv03009
]
IDJ81_11410
Enzymes [BR:
tfv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IDJ81_11410
Messenger RNA biogenesis [BR:
tfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IDJ81_11410
Ribosome biogenesis [BR:
tfv03009
]
Prokaryotic type
rRNA processing factors
IDJ81_11410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QSB43949
LinkDB
All DBs
Position
2426103..2428946
Genome browser
AA seq
947 aa
AA seq
DB search
MATRMLIDARHSEETRVAVLKGNRIEEFDFESSDHKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPKEDREALLAEEAAAAEEEAALRAQEEEDGHTPGGEYDA
DDETGEALVEEIAEDGVEEIDTSEKDDVATIEEGQLQGDDDSESDDDSDEDDDDSEDRSR
GRRGRSRGRRQSRGGNRSRAKEVDEVRAKRLALRRRYKIQDVIQRRQVLLVQVVKEERGN
KGAALTTYLSLAGRYCVLMPNSSHGGGISRKISSAADRKRLKTIVSDLSLPRSMGLIVRT
AGLSRTKTEIKRDFDYLARLWDEIRERTLGSSAPAMIHSDSDLIKRAIRDIYNREIEEVV
VEGEEGYRSAKEFMKLLMPSHARRVKAYSDPVPLFQRYGAEDQLRAMYDPEVQLKSGGYL
VINPTEALVSIDINSGRSTKEHGIEATALSTNLEAAKEIARQLRLRDMAGLVVIDFIDME
RSGNIRKVERAMKDALKNDRARIQVGRISGFGLMEMSRQRLRTGVLEATTRECPHCDGTG
LVRTASSAGLSALRLIEDEAARGKGTIISLYASTEAAVYLLNAKRADLAEIEARYGVSVE
VLPEGEDEGAKMRVASAGPRPTSAPRFDPIVDDSDDEDDLDDGEMDSDDDDRDSDDDRPR
KKRRRRRGGRGRKRDNGDVNNRDDEDASDGENDTSDDEDRADETASDDGDKPKKRRRRGG
RRRRGLNRDEVGEEGGNDSEDTAEEVIPESSADDVAEQIGEQLTDDIAVVGEAEADPAPK
PKRRARRKKAEPESEKADASEPAAEAEAAATASEDAPHEKPKRRTRRKKADIEAEAAAET
VAPSAEEKPKRTRRKKAEPKAATEIGEAQPAESAPAEEEAPTVKKPARAPRRRKAPAAAK
AAPEETQEQESVPEQPVASEPARSAPAEANEPDAKPRRGWWQRTFGE
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcgcatgcttatcgatgcgcgccactcggaagaaacccgggtggcggtgctc
aaaggcaaccggattgaggagttcgatttcgagtcctcagatcacaagcagatcaagggc
aatatctatctcgccaaagttacccgtgtagagccttctctgcaggccgccttcgtcgat
ttcggcggcaaccggcacggtttcctcgcgttcagcgaaatccaccctgattattatcag
atcccgaaggaagatcgggaggcgttgctggctgaagaagctgccgcggcggaggaagag
gccgccctgcgcgctcaggaagaggaagatggccatacccccggcggtgaatatgacgcc
gacgatgaaaccggcgaagcgttagtcgaagaaatcgctgaagatggtgtcgaggaaatc
gacacgtccgaaaaagacgacgtcgccaccatcgaagaaggccagcttcaaggcgatgac
gatagcgaatcggatgacgattctgacgaggatgacgacgatagcgaagatcggtcgcgt
ggccgccgtgggcgaagccgtggccgccgacagtcgcgcggtggcaaccgaagccgggca
aaggaggtcgacgaggttcgtgccaagcgccttgcgctgcgtcgtcgctacaaaattcag
gacgtcattcagcgccgccaggttctgctcgttcaggtcgtgaaagaagagcgtggcaac
aaaggtgccgcgcttacgacctacctcagcctcgccggccgctattgcgtactgatgccg
aattccagtcacggcggcggtattagccggaaaattagttcggctgccgatcgcaagcgc
ttgaagacaatcgtttccgatctctctttgccgcgctcgatgggcttgatcgtgcgtact
gcggggctcagtcgcacgaagaccgagatcaagcgcgatttcgattatctcgcccgcctg
tgggatgagattcgcgaacgcaccctcggatcttcggctccggcgatgatccattcggat
tccgacctgatcaagcgtgccatccgtgacatctataaccgcgagatcgaagaggtcgtg
gtcgaaggtgaagaaggctaccgctcagccaaggaattcatgaagctgctcatgcccagc
cacgcgcgtcgggtgaaggcttattcagacccggtgccgctgtttcagcgttatggtgcg
gaggaccagcttcgggcgatgtacgatcccgaagtacaattgaagagcggcggctacctc
gtcatcaatccgaccgaagccttggtgtcgattgacatcaactccggtcgttcgaccaaa
gagcatgggatcgaagcgactgcgctatcgaccaaccttgaagcggctaaggaaatcgcc
cgccagttacgcctgcgtgacatggctggccttgtcgtgatcgacttcatcgacatggag
cgcagcggaaatatccgcaaggtcgaacgcgcgatgaaggatgcgctcaagaacgatcgt
gcccgtattcaggtggggcgcatttcaggctttggcctgatggaaatgagccgccagcgt
ctgcgtaccggtgtactggaagccacaacgcgcgaatgcccgcattgcgatggcacgggc
ctggtgcgtacagcatcgagcgcaggcctttccgcactccgcctgatcgaagatgaagcc
gcgcgcggcaaagggacgattatcagcctgtatgcgtcgaccgaagcagcggtgtacctg
ctcaacgcgaagcgcgcagacctcgctgagatcgaagcgcgttatggcgtgtcggttgag
gtgttgcccgaaggtgaggacgaaggtgcaaaaatgcgtgtcgccagtgctggcccacgt
ccgacttccgcacctcgcttcgatcccatcgtcgacgacagcgacgacgaagatgatctc
gacgatggcgagatggacagtgatgacgatgaccgcgacagcgatgatgatcgtccgcgc
aagaagcgtcgtcggcgccgtggcggccggggccgcaagcgcgacaatggcgacgtaaac
aatcgcgacgatgaagatgcctctgacggcgagaacgatacttcggacgatgaagatcgc
gctgacgagaccgcttctgacgacggtgacaagcccaagaagcgccgtcgccgtggcggg
cgtcgtcgtcgcgggctcaatcgggacgaagttggcgaagagggtggcaacgacagcgaa
gataccgctgaggaagtcatccccgaatccagtgcggacgacgtggccgagcaaatcggc
gaacaactcacagacgacatcgctgtcgtcggtgaagccgaggccgatcctgcgccaaaa
ccaaagcgacgggcccgccggaaaaaggcagagcccgaatccgagaaggccgatgccagc
gaaccagctgcagaagcagaagcagcagcgaccgcgagtgaagacgctccccacgagaag
ccgaagcgccgcactcgtcgcaagaaggcagatatcgaagcagaggccgccgcggaaaca
gtggcaccatctgctgaagagaagcccaaacgcacccgccgtaagaaggcagagccaaag
gcggcaaccgagataggcgaggcgcaaccggcggagtcagcgcccgccgaagaagaagcg
ccgacggtcaaaaaacctgctcgcgctcccagaagaaggaaagcgcccgccgctgcgaag
gccgctcctgaggaaacgcaggaacaggaatctgtgccagagcaaccggttgcgtcagaa
cccgccaggtctgcgcccgcagaagccaacgaaccagatgccaaaccgcgccggggatgg
tggcagcgtaccttcggagaatag
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