Tistrella mobilis: TMO_c0704
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Entry
TMO_c0704 CDS
T02128
Name
(GenBank) Ribonuclease E and G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tmo
Tistrella mobilis
Pathway
tmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TMO_c0704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmo03019
]
TMO_c0704
03009 Ribosome biogenesis [BR:
tmo03009
]
TMO_c0704
Enzymes [BR:
tmo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
TMO_c0704
Messenger RNA biogenesis [BR:
tmo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TMO_c0704
Ribosome biogenesis [BR:
tmo03009
]
Prokaryotic type
rRNA processing factors
TMO_c0704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AFK57314
UniProt:
I3TX26
LinkDB
All DBs
Position
pTM3:839847..843209
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AA seq
1120 aa
AA seq
DB search
MLIDANHPEEMRVVVTNGNRLEEFDFETSTKKQLKGNIYLAKVTRVEPSLQAAFVDYGGN
RNGFLAFSEIHPDYFQIPVADREALVREVEKAAREDAEREARADAGEGPEIEEVGGSDVD
DIAAGGASRRRLQPHRQYKIQEVIKKRQLILVQVAKEERGTKGAALTSYISLAGRYCVLM
PNTPNGGGISRKISDARTRKKLRETLTELGTPAGMSVVLRTAGAERTKTEIKRDYEYLSR
LWDDIRERTLSSRAPALIYEEADIIKRSIRDIYSNDIDELLVEGSDGYRAAKEFMRMLMP
SRARLVKQYGDRIPLFHRYQVETQLASMHSPTVRLPSGGYVVINQTEALVAIDVNSGRST
RERNIEETALKTNLEAADEVARQLRLRDLAGLIVIDFIDMDDRKNNRAVERRLKEAMKAD
RARIQLGRISGFGLLELSRQRLRPSLIEASTMQCPHCGGTGLVRSVESTALAALRAVEEE
GIRERTEELVLRVPTEVALYIFNHKRDMLADIEARYVFRVLVEAADNLTPPTPYELERTR
QRKEGEIPERPAGSERPVTAESSAAAADADAARIAAEVAEAEAEEEAMAEAEAAAEARSE
AEAETRPEADSQSEEERNRRKRRRRSRRRKRRDDETQSTAEGEDQAEDQDEDGEAEGDTE
ADTATTEAEGESTEDARNADDRNAEERNAEENGRRRRRRRRRRPGNGEVRIEAQTTDGEQ
ATDEEQAGDEAENAEAETAEAVSETETPAVEAPGAESEVVEPVAEVVEAEEGRGRRRRRR
RRPGEVEAVAAVEADAAPAPVSDEAPVSEPEPVSEPASVSETGPASDETPAEAAPVDTAA
VDLAPAEETVATDAPAAESEAPVSEPEPVPEPAPEPEMVGADLVPEADAVVEADAVVAAE
EPVAAPEKPKRRRKVKAETEAEAPAEAAPKPRRRRKVAETAADAPAEAEAVAEAAPTRKR
ATRAKATTAKATAAKAATTKAAAAKTTRARKAKAVEGAEPVEAAAEAPKPRRRRKAEPAV
EAAEPALVVTAVETGAEPPVIDGPAAAAVAEAAEAPAAPLEPPFREEATAETAPEATEAE
TGTKAEPQPAGDDEPAVTVIEAEGAPERPRRGWWASRGRS
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgacgcgaaccaccccgaagaaatgcgggtggtcgtcaccaacggcaaccgg
cttgaagaattcgatttcgaaacctcgaccaagaagcagctgaaggggaatatctatctc
gccaaggtgacccgggtggagccctcgctccaggccgcgttcgtcgattacggcggaaac
cggaacggtttcctggccttcagcgagatccatcccgactacttccagatccccgtggcc
gaccgtgaagccctggtccgcgaggtcgagaaagcagcgcgcgaggatgccgagcgcgaa
gcccgcgccgatgccggcgaaggccccgagatcgaggaggtcggcggttccgacgtcgac
gacatcgcggccggcggcgccagccggcggcggctgcagccgcaccgccagtacaagatc
caggaagtcatcaagaagcggcagctgatcctggtccaggtggccaaggaagagcgcggc
accaagggtgcggccctgaccagctatatttcgctggccggccgctattgcgtgctgatg
cccaacacgcccaatggcggcggcatctcgcgcaagatttcggacgcccgcacccgcaag
aagctgcgcgagaccctgaccgagctgggcacccccgccggcatgagcgtggtgctgcgc
accgccggcgccgagcgcaccaagaccgagatcaagcgcgactacgaatatctctcgcgg
ctgtgggacgacatccgcgagcggaccctgtcgtcgcgcgccccggccctgatctatgaa
gaggccgacatcatcaagcggtcgatccgcgacatctattccaacgacatcgacgaactg
ctggtcgagggcagcgacggctatcgcgccgcgaaggagttcatgcggatgctgatgccc
agccgcgcgcggctggtgaagcagtatggcgaccgcatccccctcttccaccgctatcag
gtcgaaacccagctcgcctcgatgcactcccccaccgtgcgcctgccctcgggcggctat
gtggtgatcaaccagaccgaggcgctggtcgcgatcgacgtcaattcgggccgctccacc
cgcgagcggaacatcgaagagaccgcgctcaagaccaatctggaagccgccgacgaggtc
gcccgccagctgcgcctgcgcgacctggccgggctgatcgtcatcgacttcatcgacatg
gacgaccgcaagaacaaccgtgcggtcgaacggcgcctgaaagaggcgatgaaagccgat
cgcgcccgcatccagctgggccggatcagcggtttcggcctgctggaactgtcgcgccag
cggctgcgcccgtcgctgatcgaggccagcaccatgcagtgcccgcattgcggcggcacc
ggtctggtccggtcggtggaaagcaccgcccttgccgctctgcgcgcggtggaagaggaa
ggcatccgcgagcgcaccgaggagctggtgctgcgcgtgccgaccgaggttgcgctctat
atcttcaaccacaagcgcgacatgctggcggatatcgaggcccgctatgtcttccgcgtg
ctggtggaagccgccgacaacctgacgccgcccacgccttacgagctggagcgcacccgc
cagcgcaaggaaggcgagatccccgagcgcccggccggcagcgagcgcccggtgaccgcc
gaatcctcggcagccgccgccgatgccgatgccgcgcgcatcgcggctgaggttgccgaa
gccgaggccgaggaagaggcgatggcggaggcagaggccgccgccgaggcccggagcgag
gccgaagccgagacccggcccgaggccgacagccagagcgaggaagagcggaaccgccgc
aagcggcgccgccggtcgcgccggcggaagcgtcgcgacgacgagacccagtcgaccgcc
gagggcgaggatcaggccgaggaccaggacgaagacggcgaggccgagggtgacaccgag
gccgacaccgccacgaccgaggccgaaggcgagagcaccgaagacgcccggaatgccgac
gaccggaatgccgaggagcggaatgccgaggagaacggccgccgtcgccgtcggcgtcgc
cggcgtcgcccgggcaatggcgaggtccgcatcgaggcccagaccacagacggggagcag
gccaccgacgaagagcaggccggcgacgaggcagagaacgccgaggccgagaccgccgag
gcggtgagcgaaacggaaaccccggcagtcgaagcgcccggcgcggagagcgaggtcgtc
gagcccgtggccgaggtggtcgaagccgaagagggtcgcggccgtcgccgccgccgtcgt
cgtcggccgggtgaggtcgaggcggtcgcggccgtcgaagccgatgccgcccccgctccg
gtgagcgacgaggcgcccgtgagcgagccggagcccgtgagcgagccagcttccgtgagc
gaaacggggccggcgagcgacgagacgcccgccgaagcggcacctgtcgacaccgcagcg
gtcgacctggcaccggctgaagagaccgtggccaccgacgcccccgccgcggagtccgag
gcgccggtcagcgaacccgagcccgtccccgaacccgcccccgaacccgagatggtcggt
gcggatctggtgcccgaagccgatgccgtggtcgaggccgatgcggtggttgccgccgaa
gagccggtggccgcaccggagaagccgaagcgccgccgcaaggtgaaggcagagaccgaa
gccgaggcgcccgccgaggccgcgccgaagccgcgccgccgccgcaaggtggccgagact
gccgcggacgccccggccgaagccgaggcggtggcagaggcggcccccacccgcaagcgg
gcgacgcgcgccaaggcgacgacggccaaggcgacggcggccaaggctgcgaccaccaag
gccgccgcggccaagaccacccgcgcccgcaaggcgaaggcggtcgagggggctgagccc
gtcgaggctgccgccgaggcaccgaagccgcgccgccgccgcaaggcggagcctgcggtg
gaggcggccgagccggccctggtcgtgaccgccgtggaaaccggtgccgagccgccggtg
atcgacggcccggccgccgccgcggtggccgaagccgccgaagccccggccgccccgctg
gagccgcccttccgcgaggaagcgaccgccgagacggcaccggaggccaccgaagcggag
accggcacgaaggccgagccgcagccggccggcgatgacgagccggccgtgacggtgatc
gaggccgaaggcgcgccagagcgcccgcgccgcggctggtgggcctctcgcggccgcagc
tga
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