Thermotoga sp. RQ2: TRQ2_1472
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Entry
TRQ2_1472 CDS
T00706
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
trq
Thermotoga sp. RQ2
Brite
KEGG Orthology (KO) [BR:
trq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
trq03016
]
TRQ2_1472
Enzymes [BR:
trq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TRQ2_1472
Transfer RNA biogenesis [BR:
trq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TRQ2_1472
Prokaryotic type
tRNA splicing ligases
TRQ2_1472
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACB09816
UniProt:
A0A0F6AME4
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All DBs
Position
1480614..1482038
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AA seq
474 aa
AA seq
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MKIERLDKYIWKIPKEGDMKVDAIIFTDAESVNDPQFREAMKQLMNVATLPGIVKYALAM
PDIHWGYGFPIGGVAAFDVKEGIISPGGVGFDINCGVRLMKTDLTYEDVKDRMRSLVEAI
YEFVPAGVGSTGDIVLGKKGLRKVLVEGAEWAVKSGYGLEEDLERIEDGGKIHPADPSYV
SEEAFERGSDELGTLGAGNHFVEVQMVQEIYDEELAEFFGLEIGTITVMIHSGSRGFGHQ
VATDYIRLMRDNLKEHNKNLPDKQLINAPFEHPLGQAYYSAMNCAANYAFANREILGHLV
RKAFWKVFGRDTRVDLIYDVAHNIAKVEEYEVDGKRRKLVVHRKGATRSLGPGSEKVPSI
YREVGQPVIIPGDMGTASYLLVGTKKAEEKTFGSTAHGAGRVLGRSAALKKLDYREVLDE
LAEKNIVVMSKSKKTLVEEAPEVYKDVDRVVQIVHEIGISRKVARMIPLGVVKG
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgaagatagaaagactcgataaatacatctggaaaattccaaaagagggagatatgaag
gttgacgcgatcatattcacggacgccgagagtgtgaacgatcctcagttcagagaagcg
atgaaacagctcatgaacgtggccacgcttcccggcattgtgaaatacgccctcgccatg
ccggacatacactggggttacggctttccaataggaggagtcgccgctttcgatgtgaaa
gaaggaatcatttcgccgggtggtgtgggtttcgatataaactgtggagtacgcctgatg
aagacagatctcacctacgaagatgtgaaagatagaatgaggtctcttgtcgaagctata
tacgaattcgttcccgcgggtgttggttcaacgggagacatcgttctcggcaagaagggg
ctcaggaaagttctcgttgaaggtgcggagtgggctgtcaagtcagggtacggtcttgag
gaagatctggaaagaatcgaagacggtggaaagatacatccagcggatccctcgtacgta
tcggaggaagcgttcgagagaggaagtgacgagctcggaactctcggtgcgggaaaccac
ttcgtggaggttcaaatggttcaggaaatatacgacgaagaactcgctgaatttttcggt
ctggagatcggtaccatcacggtgatgattcactccggaagcagaggattcggacatcag
gttgcgaccgactacataaggctcatgagggataatctgaaggaacacaacaaaaatcta
cccgacaaacagcttataaacgctccgttcgaacatccacttggacaggcctattattct
gccatgaattgtgcagcgaactacgcgttcgcgaacagggagatcctcgggcatctcgtt
agaaaagctttctggaaagtgttcgggagagacacacgtgttgatctcatctacgacgtt
gctcacaacatcgcaaaagtggaagagtacgaagttgacggaaaaagaagaaaactggtc
gtccacagaaagggtgccacacgttctcttggtcccggaagcgaaaaggttccttcgatc
tacagagaagtgggacagcccgtcatcataccgggtgacatggggactgcttcctatctt
ctggtaggaacaaagaaagccgaagaaaagaccttcggttccaccgcacacggagcgggg
agagtccttggaaggtccgctgccctgaagaagctggattacagggaagttctcgatgaa
ctggcagaaaaaaatattgtcgtcatgagcaagagtaaaaagactctggttgaagaagct
cctgaagtttacaaagacgtggacagagtggtgcagatcgttcatgagataggtatttcg
agaaaagtagccaggatgattcctcttggtgttgtgaaggggtga
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