Tachysurus vachellii: 132838736
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Entry
132838736 CDS
T09596
Symbol
acana
Name
(RefSeq) aggrecan core protein isoform X1
KO
K06792
aggrecan 1
Organism
tvc
Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tvc00535
]
132838736 (acana)
00536 Glycosaminoglycan binding proteins [BR:
tvc00536
]
132838736 (acana)
04091 Lectins [BR:
tvc04091
]
132838736 (acana)
Proteoglycans [BR:
tvc00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
132838736 (acana)
Glycosaminoglycan binding proteins [BR:
tvc00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
132838736 (acana)
Lectins [BR:
tvc04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
132838736 (acana)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
EGF
V-set
hEGF
Motif
Other DBs
NCBI-GeneID:
132838736
NCBI-ProteinID:
XP_060715274
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Position
23:complement(8988069..9001442)
Genome browser
AA seq
1609 aa
AA seq
DB search
MTSLLLLCFCLRVISAKWITTDYLYTEPERTLSVSIPIGPSIQTLMGDTLVLPCYFRDGT
VPDPGAPTIAPLSHRIKWSIITQKKTTDILVATEGIVSVNKNFIDRVQMVGYPTSTTDAT
IKITQLLSNESGEYRCEVIHGIVDSFDSVNVQVQGIVFHYRAITSRYTLTFEKAHAACIQ
NSAVIATPMQLQAAYDSGYHQCDAGWLSDQTVRYPIHDPREACYGDKYEFPGVRTYGVRD
VNETYDVYCFAEKMSGRVFYTTCPTKFTFAEAQAACTKLGAKLATTGQLYLAWKAGMDEC
NAGWLADGSVRYPINFARPQCGGGLLGVRTVYRFINQTGYPLPESRYDAICYTDEEEEGS
AIPNIFPDIQTTSSEVLSVNLVTVDPPVFITQTSTENELIGEIETHKPPTTTSDFLYVEQ
NVTQLPLSSPPSVTDDFVNMVTAQPDLGEIPDENATAPVISLTGVVFHFRLGHRRYAFTF
SEAQLACQDIGAVIASPQQLQAAYEAGYHHCDAGWLTDQTVRYPITSAREKCAGDLEYLP
GVRSYGVRPDNELYDVYCYMDKPRGNVFHVSSFEGLTYDEATAYCQAQNSSLASTADLYV
AWKQGFDKCRPGWLIDRSVRYPINNPRPQCGGGKPGVHTVFKFPNQTEYPDVHSKFDAYC
LDGDFQLYFNETGSNLTLIEEEMVNLTSRNDLSKPVNPTIIPPIHVDLSGSGSADLPSGS
KDYSSDVSVSGSGEQPSGSSGLGELSGSGLPSGSSGLAKELSGSGMPSGSSGLAAELSGS
GVPIWSSGLGGELSGSGLQSGSSGLAAEPSGSGVPTWSSGLGGELSGSGMPSGSSGSAAE
LSGSGVQSWSSGLGGELSGSGLPSGSSGLAGELSGSDVPIWSSGLGGELSGFGLPSGSSG
LAAELSGSGVPSWSSGFKGELSGSGLSSWSSGVEDVFSGSGPSGDMSGSGLSGDGLSISV
TFSGTGSKFSGDASSSWTPQEAGEGSAEILTFTPGLGSGFFSGDGSGSGSGSSFGSTESG
STSEFFSILEDRESGEPSGISSGLGSSSEISGFSGFPSGLTSSGDDSGVSGLSGNGIVLV
KGQWVEMSTVPTLTAQELGGSQMHFSGSGDQQGSGLSGSGVSGSGDFSSTGSGSVFPAIT
FFESHFSDLTGLSSTEQEASGILMYGSGEGSGDFSGHSGVPSGDTSEASASRNIVSLADE
SLVEVSFRSNQNQELRKGPIEHSGRENGTFLSSGDQLSNISSENHHVTSSASEDPIYSID
EPSVLVPSGLFSKSEWLKELFSNPADSATPAPISGTTTNPTFLIQTPAVIEIPAMVNAAV
DPCNPNPCGAAACSVQDGVGVCHCPPGVKVEDCHVEVDVCHSNPCANGATCVEVQDAFKC
LCLPSYGGDRCEIDIETCEEGWTKFQGNCYLHFSERAVWEEAEQHCRGLGAHLVSITSQE
EQVFVNSHAHDYQWIGLSDKTFENDFQWTDGTPMQYENWRPNQPDNYFKSGEDCVVMVWH
EFGQWNDVPCNYHLPFTCKTGPVTCGQPPELQNARWFGTKKERYQVNSIIRYQCNDGFRQ
RHLPVVRCMADGHWQKPQVECIPQIKKRLLKRSIRRRSAKKTSLRKHLK
NT seq
4830 nt
NT seq
+upstream
nt +downstream
nt
atgacatcactgttgttactgtgtttctgtcttcgggtaatctcagcaaaatggatcaca
acagactatttgtatacagaacctgaaaggactctgagtgttagtatccccattggccct
tctatccaaaccttaatgggagatacattggttctgccctgctatttcagggatggcaca
gtgccggacccaggtgctcccaccatagcccctttgtcccatcgtatcaaatggagcatc
atcactcaaaagaagaccacagacattttggtggccactgagggtatagtgtcagtgaat
aagaacttcatagacagggttcaaatggtgggttaccccaccagcactactgatgccacc
attaaaatcacacagcttctttcaaatgaatctggagagtatcgctgtgaagtcatccat
ggaattgtagacagcttcgattctgttaatgtccaggtgcaaggcattgttttccattac
cgtgccattacttcacgctacaccctgacatttgagaaggcacatgcagcttgtattcag
aatagtgctgtgattgccacaccaatgcagctacaggcagcatatgattcagggtaccac
cagtgtgatgcaggctggctttcggaccagactgtaaggtatcctatccatgacccccga
gaggcctgctatggtgacaaatatgaattcccaggagttagaacgtatggagtaagggat
gtaaacgagacctatgatgtgtattgctttgctgagaagatgtcagggagggtgttctat
acaacatgccctacaaagttcacctttgctgaagctcaggctgcatgtactaagctgggt
gctaaattagccacaactggccagctctacctggcctggaaagctggtatggatgaatgt
aatgcaggttggctggcagacggtagtgtccgctatcccatcaactttgcccgtccccag
tgtggaggaggtctgctgggagtgcgcactgtgtaccgcttcattaatcagacaggctac
cctctaccagaatcaagatatgatgctatctgttacacagatgaggaagaggagggctca
gccatccccaacatcttcccagatatacagactacgtcaagtgaggtactaagtgtgaat
ttggtgacagttgatccaccagtgtttatcacacagacttccactgagaatgaactaatt
ggggagattgaaacccacaaaccccccaccacaacttctgacttcctgtatgtggagcag
aatgtcacacagctgcctctgtcttcaccacccagtgtcactgacgactttgtaaacatg
gtgactgcacagcctgaccttggggagattcctgatgaaaatgcaactgcacctgttata
tccctgactggtgtcgtcttccacttcagactaggtcacagacgctatgcttttaccttt
agtgaggctcagctagcctgtcaggacatcggtgccgtgattgctagtcctcagcagtta
caggctgcctatgaagctggttatcaccattgtgatgcaggctggctgactgaccagact
gtcaggtatcctatcacatctgcacgagagaaatgtgctggtgatttggaatatttgccg
ggtgtgaggtcttatggtgtacgacctgataatgagctctatgatgtatactgctacatg
gacaaaccaagagggaatgtctttcatgtgagttcatttgagggtttgacatatgatgaa
gcaacggcttattgccaggcccagaattcctccttggcctccacagctgatctgtatgtg
gcctggaagcaaggctttgataagtgtcgccctggctggctcatcgaccgcagcgtccgc
tatccaattaataaccccaggcctcagtgtggaggagggaaacctggagtccatacagtt
tttaagtttcctaaccagactgaatatcctgatgtgcactccaaatttgatgcctactgc
ttggatggtgatttccaattatattttaatgagactggatcgaacctgacactaattgaa
gaggaaatggtgaacctgacttcaagaaatgacctttctaaacctgtgaaccccactatt
attcctccgattcatgtggacctctctggttctggttcagcggacctgccatctgggtcc
aaggattattctagtgatgtatcagttagtggaagtggggaacagcctagtgggtcatca
ggtttaggagaactttcaggatcaggactgcctagtgggtcttcaggtttagccaaagaa
ctttcaggatctggtatgccaagtgggtcttcaggtttagcagcagaactttcaggatct
ggtgtgccaatttggtcttcaggtttaggaggagaactttccggatctggactgcaaagt
gggtcttcaggtttagcagcagaaccttcaggatctggtgtgccaacttggtcttcaggt
ttaggaggagaactttcaggctctggaatgccaagtgggtcttcaggttcagcagcagaa
ctttcaggatctggtgtgcaaagctggtcttcaggtttaggaggagaactttccggatct
ggactgccaagtgggtcttcaggtttagccggagaactttcaggatctgatgtaccaatt
tggtcttcaggtttaggaggagaactttcaggatttggactgccaagtggttcttcaggt
ttagcagcagaactttcaggatctggtgtgccaagttggtcttcgggttttaaaggtgaa
ctttcaggatctggactgtcaagttggtcatcaggtgtagaagacgtcttttctggatct
gggccaagtggagacatgtctggctcaggccttagcggtgatggcttaagcataagtgtg
acattctcaggaactggctcaaaattctctggggatgcctcatcttcatggacacctcag
gaagcaggggagggcagtgcagagattctcactttcactccaggtctgggttctggcttc
ttcagtggggatgggtctggatcaggaagtggctctagttttggttcaacagagagtggg
tctacatcagaatttttcagcatcttggaagacagagaaagtggggaaccttctggcata
tcttcaggccttggttctagcagcgagatctctggattcagtggttttccatcaggcttg
acttcctcaggagatgacagtggtgtctctgggcttagtggcaatggaatagtcttggtg
aaaggccagtgggtcgaaatgtctactgttccaaccctcacagctcaggagctgggtgga
agtcaaatgcatttcagtggatctggagaccagcaagggtctggtttaagtggctctggt
gtgagtggaagtggtgacttcagcagcactggaagtggttcagtatttcctgccatcacc
ttttttgaatcacacttttctgatctcacaggcctatctagcacagaacaagaggcttct
ggaattttgatgtatggatcaggggaagggagtggtgacttttctggacactctggtgtt
ccatctggagacacatcagaggcatcagccagtaggaatattgtatcacttgctgatgag
agcttagtggaagtttctttcagatccaatcaaaaccaggagcttagaaaaggaccaata
gagcacagtgggagggagaatggaacatttctgagcagtggggaccaactttctaatatt
tcaagtgaaaatcaccatgtcacatcatctgctagtgaagacccaatttattcaatcgat
gagccatcagttctggttccgtcaggactgtttagtaagagtgaatggctaaaggaattg
ttttcaaatcctgctgattcagcgactccagcacctatatctggcaccactaccaaccct
acctttttgattcagaccccggctgtcatagagatcccagccatggtgaatgctgctgtg
gacccatgtaacccaaacccctgtggtgctgctgcgtgttctgtgcaggacggggttggt
gtgtgtcactgcccacctggggtgaaagtggaagattgccatgttgaggttgatgtgtgc
cattcaaacccttgtgccaatggagctacgtgtgtggaagtacaggatgctttcaaatgc
ttatgcctgcccagctatggaggggatcgctgtgagatcgacatagaaacatgtgaggag
ggctggactaagtttcagggcaactgttacctacacttctctgagcgagcagtgtgggag
gaggctgaacaacactgtcgaggccttggagctcatctggtcagcatcaccagccaagaa
gaacaagtatttgttaactcccatgcacatgattaccagtggattggactcagtgataag
acctttgagaatgacttccagtggacagatggaaccccaatgcaatatgagaactggagg
cctaatcagccggataactatttcaagtctggtgaggattgtgtggtgatggtctggcac
gaatttgggcagtggaatgacgtgccttgcaactatcatctaccattcacatgcaaaact
ggacctgtcacatgtggccagcctcctgaactgcagaatgccagatggtttgggactaag
aaagaacgctatcaggtcaactcaataatcagatatcagtgcaatgatggcttcagacag
cgccatctaccagtggttcgctgcatggcagatggacactggcaaaagccacaggtggaa
tgcataccccaaatcaaaaaaagactactgaagagatctattaggcgtcgatctgccaag
aaaacatcgttgaggaagcacctcaaatga
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