Thiocystis violascens: Thivi_2191
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Entry
Thivi_2191 CDS
T02138
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tvi
Thiocystis violascens
Pathway
tvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thivi_2191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvi03019
]
Thivi_2191
03009 Ribosome biogenesis [BR:
tvi03009
]
Thivi_2191
Enzymes [BR:
tvi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Thivi_2191
Messenger RNA biogenesis [BR:
tvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Thivi_2191
Ribosome biogenesis [BR:
tvi03009
]
Prokaryotic type
rRNA processing factors
Thivi_2191
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AFL74141
UniProt:
I3YAX3
LinkDB
All DBs
Position
2392681..2395791
Genome browser
AA seq
1036 aa
AA seq
DB search
MKRMLINATQPEELRVATVDGQILYNLDIESPGREQKKSNIYKGIITRVEPSLEAAFVEY
GADRHGFLPLKEIARAYFEPDTTKAGTRVSIKDSVREGREVVVQIDKEERGSKGAALTTF
ISLAGRYLVLMPNNPRAGGVSRRIEGQDRNELRDAMSQLVIPEDMGLIVRTAGVGKNVEE
LQWDLDYLLQLWKAIETSGEGRKAPFLIYQESDVIIRSIRDYLRADIGEIVIDDPEVFER
AENFISQVMPQNLKKLRLYEDEVPLFTRYQIESQIESAFQREVRLPSGGSIVIDHTEALT
SVDINSARSTKGADIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMTPPKNQRAVE
DRLRDALKQDRARVQVARISRFGLLEMSRQRLRPSLGESSQRVCPRCKGQGTIRGVESLA
LSILRIVEEEAMKENTQRIVAQLPVSVATFLLNEKRRAILDIEHRQGAEVLLLPNEHLQT
PDYRIERVRVQDTAKPDELQSSYELTAPPEPSAAPLYAKLDAKLGQPDRREEPAVKLVTP
STPAPQRDASRMPAPAATRKEPERSEPESLLKRIWTGLFVPRAPDAETLSSRAGSLEDAT
DTHQPAPARQQPQSADRDPQPQRQRSSSAHRDDRSSPGRSLQSREDRTRGGRSRSDQTPA
GADQSDQERRHRDDRGESAKAADGDEQTRGTRAGEPRSRRGGTRGRRGPGDTRGTAPRAE
DREPRQGEAASSHVNPAPVEKDGNVPSATSATGAVSTSASQDANGQRWWESPQDASEEET
WSESTPQANGASDARAETVDLEPGERDAGEEETDAASAGTARPRSSRRRRGGRNRRRPQT
NPEASAGSEAHDPTQSDDPERTHDSAPEPAAESVSEPAEELARSHHETSPEPMTAPDTPV
SAPQPTPQASTQEPHTPSAQPEPAETQPLLQAMLPIPEPVPTSEPEPIPEQEPARTPEPV
ASPSLPETTDQTGSAPAPAHNLPSDATAAEPQGIDARSSDEEPAPSQPETHSSDAEPAPK
PIVVAQEEPERTASGS
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgctgatcaacgcaactcagccggaagagttgcgcgtcgcgaccgtcgac
ggccaaatactgtacaacctcgacatcgaatcgcccggcagggaacagaaaaaatcaaat
atttacaaaggcataatcacaagagtcgaacctagcctggaagccgcattcgtcgaatat
ggcgccgaccgccacggctttctgccgctgaaggaaatcgcgcgcgcctatttcgagccg
gacaccaccaaggccggcacccgcgtcagcatcaaggactcggtccgcgagggccgcgag
gtcgtggtgcagatcgacaaggaagagcgcggcagcaagggtgccgcgctgaccaccttc
atctcgctggccgggcgctatctggtgctgatgccgaacaatccgcgcgctggcggcgtc
tcgcggcgcatcgagggccaggatcgcaacgagctgcgcgacgccatgagccaactcgtg
atccccgaggacatgggcctgatcgtgcgcacggcgggcgtgggcaagaatgtcgaggaa
cttcagtgggatctcgactacctgctccagctctggaaggccatcgagacctcgggcgag
ggacgcaaggcgccctttctgatctatcaggaaagcgatgtcatcatccgctcgatccgc
gactatctgcgcgcggacatcggcgagattgtgatcgacgacccggaggtcttcgagcgg
gccgagaacttcattagccaggtgatgccgcagaatctcaagaagctgcgcctgtacgaa
gacgaagtgccgctgttcacccgttaccagatcgagagtcagatcgaatccgccttccag
cgcgaggtgcgcctgccctcgggcggctccatcgtcatcgatcacaccgaggcgctgacc
tcggtcgacatcaactcggcgcgctccaccaagggcgcggatatcgaggagaccgcgctc
aacaccaatctggaagccgccgacgaaatcgcgcgacaactgcgtctgcgcgatctcggc
ggactcttcgtcatcgacttcatcgacatgaccccgcccaagaaccaacgggcggtcgag
gaccggctgcgcgacgcgctcaagcaggatcgtgcacgggtccaggtcgcgcgcatctcg
cgcttcggcctgctggaaatgtcgcgtcagcgtctgcgcccctcgctcggcgaatccagc
cagcgggtgtgtccgcgctgcaagggtcagggcaccatccgcggagtcgaatcgctggcg
ctgtcgatcctgcgcatcgtcgaggaagaggcgatgaaggagaacacccagcgcatcgtc
gcccaactcccggtcagtgtcgccaccttcctgctcaacgagaaacgccgtgcgattctc
gacatcgaacatcgccaaggcgccgaggtgctgctgcttcccaacgagcatctgcagacc
ccggactatcgcatcgagcgcgtgcgcgtccaggacacagccaaaccggacgagctgcaa
tcgagctacgagctgaccgcgccccccgagccgagcgccgcccccctgtacgccaagctc
gacgcgaaactcggtcagccggaccgccgcgaggagccggcggtcaagctggtcaccccc
agcaccccggcgccgcagcgcgatgcctcgcgcatgccggcaccggccgcgacgcgcaag
gagcctgaacgcagcgaaccggaaagcctgctgaaacgcatttggaccggcctcttcgtg
ccccgcgcgccggatgccgaaacgctgtcttcacgcgccggcagtctggaagacgcgacc
gatacccatcagccggccccggccagacaacaaccgcagagcgcggaccgggatccgcag
ccacaacgccaacgctccagcagcgcgcatcgcgacgatcgatcaagccccggcagatcg
ctccaatcccgcgaagaccgcacccgcggcggccgttcgcgcagcgatcagacacccgcc
ggcgcggaccagagcgatcaggaaaggcgccaccgagacgaccggggggagtcggcaaaa
gcggcggacggcgacgagcaaacccgtggcacccgtgcgggcgagccgcgctcgcgccgc
ggcggcacacgcggacgtcgcggtcctggcgatacgcgcggcacggcaccgcgcgcggaa
gaccgggagccccgtcagggcgaggctgcttcctcgcacgtcaatccagcgccggttgaa
aaagacggaaacgtgccgtcggccacgtccgcaaccggcgccgtctccacgtcagcatcc
caggatgcgaacggtcaacggtggtgggagtccccacaggatgcgtcggaggaagagacc
tggtccgaatccactccacaggccaatggcgcttcggacgcgcgagcggaaaccgtcgac
ctggagccaggcgaacgcgacgcgggcgaggaagagaccgatgccgcctcggcgggcacc
gcccggccacgctcctcgcggcgtcggcgtggcggacgcaatcgccgccggcctcagacc
aacccggaggcatccgcgggctcggaggcgcatgacccgacgcagagcgatgaccctgaa
cgcacccacgacagcgcgcccgaacccgctgcggagtcggtttcggagccggccgaggag
cttgctcgcagccatcatgaaacctcgcccgagccaatgaccgcgccggacacacccgta
tccgcgccgcaaccaacgccccaggcgtcaacgcaggagccgcacacgcccagcgcgcaa
ccggaacccgccgagacgcaaccattgctgcaagccatgctcccgataccggaacctgta
ccgacatcggaacccgaacccataccggagcaggaaccggcacgaactccggagcccgtc
gctagtccgtccctcccggagacgaccgatcaaaccgggagcgcacccgcgcccgcgcac
aacctgccgagcgacgcgaccgcggcggaaccgcagggaatcgatgctcgctcaagtgac
gaggaacccgccccgagccaacccgagacgcactccagcgatgcggaaccggcgcccaag
ccgatcgtcgtcgcgcaagaggaaccggagcggaccgccagcggttcctga
DBGET
integrated database retrieval system
