Xanthomonas campestris pv. campestris ATCC 33913: XCC2084
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Entry
XCC2084 CDS
T00083
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xcc
Xanthomonas campestris pv. campestris ATCC 33913
Pathway
xcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCC2084 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcc03019
]
XCC2084 (rne)
03009 Ribosome biogenesis [BR:
xcc03009
]
XCC2084 (rne)
Enzymes [BR:
xcc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
XCC2084 (rne)
Messenger RNA biogenesis [BR:
xcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XCC2084 (rne)
Ribosome biogenesis [BR:
xcc03009
]
Prokaryotic type
rRNA processing factors
XCC2084 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AAM41373
UniProt:
Q8P8Z4
LinkDB
All DBs
Position
2454642..2458205
Genome browser
AA seq
1187 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY
GAERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKDALDKLDIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQ
EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVENK
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPH
YEVTRLRENELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPVAPAVTSIKPSQPAPVREE
APAAAPAPAPVVALPLPAPVTGVVGWLKRIFGGVDAPAAAPEASQQQRPRQNDAARGNRN
DRGERGGQRRDGRDARNGNGGQHRGNGGNGNGNGANKERRDERRQPTAPQTGNQPQQQQV
QVAKPARNEPQAPKQPQQGQQPKQTKQQQNQQPRPPRQQDGAPAEKQQRPARQDDAAVAQ
AVTATAATATTASVAAAIADTATPVSRTVQAHETDAAHPVDVTVTPAASEAPADAAAEGH
AQDAPAGDDGANGEGGSRRRRGRRGGRRRRRGAGATGEGGTGADGLESDDLDGDLDSDND
DAGTPAPTSSAPRAGQPEFDFDDDAGTPPARVQAKVERSPEQQTPVTPRPVPKERAETQP
PADTAAAAAPSVNSAPTTPQQSVITAQSAPVASPEAAVSSQAGSSQAASQEPAAAPHAAS
ASIEAAPAQEQQRAPVQDAPRVAPEAAAPAPAAVQSVRPEVTAPASPVQPAAPTQPAATA
SVEPSPAAQVTPAPVAPAEAAVVTVTAPHAEPSSTAGKDVDVAVTSTAAVAQPATDTAPA
APVRKPYAPVQTTLLDALAPQTPQAAAPQAQAETAPAAKVSEHSTPAAAVAPVAAQQPAE
ARQPTVVVSEASTPAAPSVDAADAADDKDDTEAAASKDDADKPRSDH
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggac
ggccagaccctgtacgacatcgacatcgaacagccgtccaaggaacagaagaagtccaat
atctacaagggtcgcatcacgcggctcgagccctcgctggaagcggcgttcgtggactat
ggcgccgagcgccatggcttcctgccgctaaaggaaatctctcgcgattacttccaggcc
ggtgtcgaccacaacaagtcgaccatccgtgagctgctgcgtgagggccaggaagtggtg
gtccaggtcgataaggaagagcgtggcaacaagggcgccgccctgaccacgttcatctcg
ctcgccggccgctacatggtgctgatgcccaattcgccgagcgccggtggcgtctcgcgt
cggatcgaaggcgaggaccgtgccgcactgaaggacgcgctggacaagctcgacatccca
gacgacatgggcgtgatcatccgcaccgccggcgttggccgcgatgccgaagagctgcag
tgggatctggattacctgctgcagacctggaaggcgattgccgaggccgcgctgagcaag
ccggcggcgttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactac
ctgcgcgccgacatcggcgaaatcctggtcgatacgccggagctgtacgccgacgcccag
gagttcatgcagcaggtcatgccgcagagcctgcgcaagctcaagcactacaccgacgac
atcccgctgttcaaccgcttccagatcgagtcgcagatcgaaggcgcctacgagcgcaat
gtgcgcctgccgtcgggcggctcgatcgtggtcgaccagaccgaagcgctgaccgccgtc
gacgtcaactcctcgcgcgccaccaagggcagcgacatcgaggaaaccgcgttccagacc
aatctggaagcggccgaagaagtggcgcgccagttgcgcctgcgtgacctcggcggtctg
gtggtcatcgacttcatcgacatggcatccaccaagcaccagcgcgaagtcgagaacaag
ctgcagaacgcgctcaagtacgaccgtgcacgcgtgcagttgggccggatctcgcgcttc
ggcctgatggaaatgagccgccagcgtctgcgtccgagcctgggcgagtccagccagatc
gtgtgcccgcgttgcgacggccatggccgcatgcgcagcgtggaatcgctgtcgctgtcg
atcatccgcgtggccgaagagcacgccatgaaggagaacaccgggcaggtgctggtccag
gctccggtggagatcgccaattacctgctcaacgaaaagcgcagcgcattgcgcgagatc
gagcagcgccatgagtcgccgatcatcatcgtggccgacgagcagctgcataccccgcac
tacgaagtcacgcgcctgcgcgagaacgagctgggcgaagacagcggcaagccgagctat
caacgcggcacgccgcgcaagttgccggtgcatgcgctgacgaaggcgcagttgaatatc
ccggtcgcgccggcggtgacttcgatcaagccgagccaaccggctccggtgcgtgaagag
gcccctgccgcggcacccgccccggcgccggtggtggcactgccgctccccgcgccggtc
accggcgtggtgggctggttgaagcgcatcttcggcggtgtcgatgccccggccgcagcg
ccggaagcgtcgcagcagcagcgcccgcgtcagaacgacgccgcgcgtggcaaccgcaat
gatcgcggcgagcgtggcggacaacgccgtgatggtcgcgatgcacgcaatggcaatggc
ggccagcaccgcggcaatggcggcaatggcaatggcaacggcgccaacaaggagcgccgc
gacgagcgtcgccagccgaccgcgccgcaaactggcaaccagccgcagcagcagcaagtg
caagtggccaagccagcgcgcaacgagccgcaggcacccaagcagccgcagcagggtcag
cagccgaagcagacgaagcagcagcaaaaccagcagccgcgtcctccgcgccagcaggat
ggtgcgccggctgaaaagcaacagcgtcccgcacgtcaggacgatgcagcagtggcacag
gccgtgaccgcgactgcagcgaccgccaccaccgcaagcgtggcagcggccattgccgat
accgccacgccggtgtccaggacggtgcaagcgcacgagaccgacgccgcacatccggtc
gacgtgacggtgacgcctgccgcctccgaggcacctgccgatgccgccgccgagggccat
gcccaggacgcaccggcaggcgatgacggcgccaatggcgagggcggaagccgtcgccgt
cgcggccgtcgcggtggtcgccgccgtcgtcgtggtgcaggcgccacgggtgaaggtggg
accggagcggatggtcttgagtccgatgatctggacggtgatctggatagcgacaacgac
gatgccggtacgccagcaccgacgtcgtccgcaccacgcgccgggcagcccgagttcgac
ttcgatgacgatgccggcaccccgcccgctcgggtccaggcaaaggtcgagcgcagcccg
gagcagcagacgccggtgacgccacgtccggtgccgaaggagcgagccgaaacccagccg
ccggctgatacggcagcggcagcggcaccgtcggtcaacagcgcaccgactaccccgcag
cagtcggtgatcaccgcgcagtcggcaccggttgcttcgcccgaagccgccgtgtcgtcg
caggcgggatcctcgcaggcagcatcgcaggaacccgctgcagcaccgcatgccgcttcg
gcatcgatcgaggctgcgccggcacaggagcagcaacgcgctcccgtgcaggacgccccg
cgtgttgctccggaggcagcggctccagctccggcagcggtgcaaagcgttcgtcctgaa
gtgactgccccggcctccccggtgcagcctgcagcaccgacgcagcctgccgcgacagcg
tcggttgagccgtcgcctgcagcgcaggtcacgccggcgcccgttgcgccggccgaagct
gccgtggtcacggtcaccgcaccgcatgccgaaccgtccagcacggccggcaaggacgtg
gatgtcgcagtgacctcgaccgccgcggttgcgcagccggccaccgacaccgcgccagcg
gcgccggtgcgcaagccctacgcgccggtgcagaccaccctgctcgatgcattggctccg
caaacgccgcaagcggcagctccgcaggctcaggccgagactgctccggcagccaaggta
tctgagcactccacgccggccgctgctgtggcacctgtggctgcgcagcaacccgcagag
gcacggcagccgacggtagtcgtgtcggaggcgtccacgccggcggcgccgtctgttgac
gctgctgatgcagcagacgacaaggacgacaccgaggctgcagcgtcgaaagacgatgcc
gacaagccgcgtagcgatcactga
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