Xanthomonas citri subsp. citri Aw12879: XCAW_01601
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Entry
XCAW_01601 CDS
T02519
Symbol
cafA
Name
(GenBank) Ribonucleases G and E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xci
Xanthomonas citri subsp. citri Aw12879
Pathway
xci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCAW_01601 (cafA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xci03019
]
XCAW_01601 (cafA)
03009 Ribosome biogenesis [BR:
xci03009
]
XCAW_01601 (cafA)
Enzymes [BR:
xci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
XCAW_01601 (cafA)
Messenger RNA biogenesis [BR:
xci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XCAW_01601 (cafA)
Ribosome biogenesis [BR:
xci03009
]
Prokaryotic type
rRNA processing factors
XCAW_01601 (cafA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AGI07401
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All DBs
Position
1799159..1802824
Genome browser
AA seq
1221 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY
GAERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ
EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENR
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPH
YEVTRLRENELGEESGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPVREE
APAPVAPVAAPVPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAPESTPRPRQNDAGRNNR
SERGERGGQRRDGRDARNGGNSGNQQRGNGGNGNGANKERRDERRQPANAQGAQNGAQAQ
QQVQVPKPPRNEAQAPKPQQQKPKPQNQSPRPPRAPAQQDGAPAERQPRPARQDEGTAAA
QTPTPTAATATTSSVVSAIADAAAAPPTNAQTNAHEAAQAHPVDVTVSESTADRGADANA
AAPAQEAAGDDAANGEGGSRRRRGRRGGRRRRRGAGANGEGGASVDGLEGDDLDSDADND
LDGDSEGDDAGMHAHASAAPRAGQPEFDFDDDAPAPAVRAKPEPAVQATAKPRPVPKERA
EPQVGSDTASTTAPVSNTVPASQPSATPVANADAARERPAAPVAATDATAKPAPAATAST
VAGTEGAAAQAAEQRPATIAQQASATPAPIAAPAPGVSAPAAAVAPAAGTAPVAAAVAPA
PAVASPVTSNAATSSSQQPSAPASAAPPAAAQAAKPDQQQPAASADVETPSVQATPVQPA
RATPAEDLSAPAAASPASQAAVVTVTSPHAEQSASQAPSSEVATTSTSTVVQASPSADTA
PVRRPYAPVQTTMLDALSPNEAAPAASSASKPPAAPAAAQESQADKPKPTVVVSEAVKPV
APSAEADRPRDDDSNKPRGDH
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggac
ggccagaccctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaac
atctataagggccgtattacccggcttgagccttccctggaagcggcgttcgtggactac
ggcgccgagcgtcatggcttcctgccgttgaaggaaatttcccgcgattatttccaggcc
ggcgtcgaccataacaagtcgaccattcgcgagcttctgcgcgaaggccaggaaatcgtg
gtgcaggtcgacaaggaagagcgtggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgcccaattcgccgagcgccggtggcgtttcgcgc
cgcatcgagggtgaagaccgcgccgcgttgaaggaagcgctggacaagctcgacattcct
gacgacatgggcgtgatcatccgcaccgccggcgtgggccgcgatgccgaagaactgcag
tgggatctggactatctgctgcagacctggaaggcgattgccgaagctgcgctgagcaag
ccggccgcgttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactac
ctgcgggccgatgtcggcgagatcctggtcgatacgccggagctgtacgccgacgcccag
gagttcatgaagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgat
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaaggcgcctatgagcgcaac
gtgcgcctgccctcgggcggctcgatcgtggtggaccagaccgaagcgctgaccgccgtc
gacgtcaactcctcgcgcgccaccaagggcagcgatatcgaagaaaccgcgttccagacc
aatctggaagcggcagaagaagtcgcacgccagctgcgcctgcgcgacctgggcggcctg
gtggtcatcgacttcatcgacatggcctcgtccaagcaccagcgcgaagtcgaaaacagg
ttgcagaacgcgctcaagtacgaccgtgcgcgcgtgcagttgggccgtatctcgcgtttc
ggcctgatggaaatgagccgtcaacggctacgtccgagcctgggcgaatccagccagatc
gtctgcccgcgttgcgacggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtggccgaagaacacgccatgaaggaaaacaccgggcaggtgctggtccag
gcgccggtggaaatcgccaattacctgctcaacgaaaagcgtagtgcgctgcgtgaaatc
gagcagcgccatgagtcgccgatcatcatcgtcgccgacgagcaactgcacaccccgcac
tacgaagtcacgcgcctgcgcgagaacgagctgggcgaagagagcggcaagccgagctac
cagcgaggcaccccgcgcaagcttccggtgcatgcactgaccaaggcgcagttgaacatt
cctgccgctccggcggtcacgtcgatcaagccgagccaaccggcaccggtgcgcgaagaa
gcccctgccccggtcgcgcccgtcgctgctccggtgccggtggtgaccgtgcccattccg
gcaccggtcactggcgtggtgggctggctgaagcggatcttcggcggcgtcgaaccggtt
gccccggccccggagtcgaccccgcgtccgcgccagaacgatgccggccgcaataaccgt
agcgagcgcggcgagcgtggcggtcagcgccgcgatggccgcgatgcccgcaacggcggc
aacagtggcaaccagcaacgtggcaatggcggcaacggcaacggcgccaacaaggaacgc
cgtgacgagcgtcgtcagcctgccaacgcccagggcgcgcagaatggcgcacaggcacag
cagcaggtgcaggtgcccaagccgccgcgcaacgaagcgcaggcgccaaagccgcagcag
cagaagcccaagccgcagaaccagagcccgcgtccgccacgtgcgcctgcacagcaggat
ggcgcgccggccgagcgtcagccgcgtccggcacgccaggatgaaggcacggcagcggcg
cagaccccgacccccactgccgcaacggcaaccacgtcgagcgtggtgtccgccattgcc
gatgccgctgccgctccacccaccaatgcgcagaccaacgctcatgaagcggcgcaggcg
catccggtcgatgtcacagtgagcgaatccaccgctgatcgcggtgccgacgcgaatgcg
gctgcaccggctcaggaggccgcaggcgacgatgcagccaatggggaaggcggaagccgc
cgtcgccgcggtcgtcgtggtggccgccgtcgtcgtcgtggcgctggcgccaacggagaa
ggtggtgccagcgtcgatggtctggagggcgacgatctggacagcgatgccgacaacgat
ctcgatggcgacagcgaaggtgacgacgctggtatgcatgcgcatgcctcggccgcaccg
cgcgctggccagccggaattcgacttcgacgacgacgcaccggcacccgcggtgcgcgcc
aagccagaacccgcggtccaggcaaccgccaagccgcgtccggttcccaaggagcgtgca
gagccacaggtcggcagtgatacggcctcgaccactgcgccggtttcaaataccgtgccg
gcatcgcagccgtcagcaacacccgttgccaacgctgacgccgcccgcgagcgccctgct
gcgcccgtcgcggctacggacgcaactgccaaacccgcgccagctgccacagcgtcgacg
gttgccggcaccgagggtgcggcagcgcaggctgcggaacagcgccccgcaacgatcgct
cagcaggcatccgctaccccggcaccgattgccgctcccgcaccaggggtatccgctccg
gcagctgcagtggctcccgccgccgggacggcaccggtcgcggctgccgtggctccggca
ccggctgtcgcatcgcctgtgaccagcaatgcggcgacaagcagctcgcagcagccttcg
gcgccggccagtgcggctccgcctgccgctgcccaggccgcgaagcccgaccaacagcaa
cccgctgcgtcggcggacgtcgaaacgccttcggtgcaagccactccggtgcagccggca
cgtgcaacgcctgctgaggacctatcggcacctgcggcagcttccccggcgtcgcaggcc
gcggtggtcacggtcacttcgccgcacgccgagcagtctgcttcacaggcgccatcttcc
gaggtggcaacgacctctacctcgacggttgtgcaggcaagcccgagtgcagacaccgcg
cccgtgcgcaggccatatgctccggtgcagaccaccatgctcgatgcgctgagcccgaac
gaggctgcgccagcggcctcctcggccagcaagcctccggcagcccctgcagcagcgcag
gaatcgcaggcagacaagcccaagccgacggtggttgtgtccgaagcagtcaagccagtt
gctccatcggccgaagccgaccggccgcgggatgacgacagcaacaagccgcgtggcgat
cactga
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