Amycolatopsis albispora: A4R43_39250
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Entry
A4R43_39250 CDS
T05547
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aab
Amycolatopsis albispora
Pathway
aab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4R43_39250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aab03019
]
A4R43_39250
03009 Ribosome biogenesis [BR:
aab03009
]
A4R43_39250
Enzymes [BR:
aab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A4R43_39250
Messenger RNA biogenesis [BR:
aab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A4R43_39250
Ribosome biogenesis [BR:
aab03009
]
Prokaryotic type
rRNA processing factors
A4R43_39250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
RD3
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AXB47747
UniProt:
A0A344LI73
LinkDB
All DBs
Position
8591905..8595024
Genome browser
AA seq
1039 aa
AA seq
DB search
MSNADTPAENTGGNPATPATASETGPLADLPARIRVHALAKLLGSSSREVLKQLVELGVT
ARSAQSSVPKEVALQVAEALGATAEAETSEAAAPEATEATQAPDATAAPEATEPPVTPQA
TKAPAVKAPAPAAEAAPAPEPEPAQARPAVRVPLFAAPSPVFLPPEPAAAPAQRAPEPAQ
AEADEDTSAEGEQAPGEDDEEGAGRRRRRRGRRGRGRGKGGDEGRDEGEVDEVEAKPQKD
QKEPKDQKDHDKKAKADEAPAEKAAEAGKAEESDEASDEAEESSRSRRRRRRRRKGSGEE
DTEAATSSDDPPNTVVHVRQGKDKDREKEAEKPVRDEVRSVRGSTRLEAKRQRRRDGREA
GRRRAPILSEAEFLARREAVERTMVVAEKGDATQIGVLEDGVLVEHFVTSSGSGSIVGNV
YLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEVDWDAAGLEGKARKIEQALSTGDSVLVQV
TKDPVGHKGARLTTQISLPGRFLVYVPAGGATGISRKLPENERRRLKDILKRIVPEDAGV
IIRTASEGIAEEELDRDVRRLKAQWDVIKEKAEAGKGKKSGAPTLLYEEPDLLVKVVRDL
FTEDFAKLEVQGNTAWETIQGYVAHVAPDLADRLKRYSGNGDVFADYRIDEQITKALDRK
VWLPSGGYLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGG
IIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRKKVGTGLLEAFS
TTCEHCKGRGVVVSTDHQPKNGSGNGGGGNGGHQHGSSRRSRGRGNKAEEQPQPEPKATE
PPTPVQRESVVTAVQAMANASKSAKGEHEDAEAKAPELNGHVAERAEEAQEVPAESPATA
AAEAQQASGTTENAEKAEKAEAAKAPEAPAKPEAPEAAEAPETAAKAEAAEKAPEKAPAA
AQAEPSQAAERAEAAQQQAEQPEASSQAPEAAETSQTAETSEVPEVSVPAPAAKTTRRRA
RRVASRPAGPPVTAGENSQ
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgcggacacacccgccgagaacaccggcgggaatcccgccacacctgcaacc
gcatcggagaccggcccactggccgatctgcctgcccggatcagggtgcacgcactggcc
aagctgctcggttcgagcagccgcgaggtgctcaagcagctggtcgagctgggcgtgacg
gcgcgcagtgcgcagtccagcgtgcccaaggaggtcgcgctccaggtcgccgaggcgctc
ggtgccacggccgaagcggagacatccgaggctgcggccccggaagccactgaagccacc
caagccccggatgccaccgcagctccggaagccactgagcccccggtgaccccgcaggcc
accaaggccccagcggtcaaggccccggctcccgccgccgaggccgcgcccgccccggaa
cccgagccggcgcaggctcgcccggccgtgcgcgtgccgctgttcgccgcgccgtcgccg
gtgttcctgccgccggagcccgccgccgcgcccgcccagcgcgcgccggaacccgcgcag
gccgaggccgacgaggacaccagcgccgagggtgagcaggccccgggcgaggacgacgaa
gaaggcgccggtcgccggcgtcgccgccggggccgtcgtggccgcggccgcggcaagggc
ggcgacgaaggccgggacgagggcgaggtcgacgaggtcgaggccaagccccagaaggac
cagaaagagccgaaggaccagaaggaccacgacaagaaggccaaggccgacgaggccccg
gccgagaaggccgccgaagcgggcaaggccgaggagtccgacgaagcctccgacgaggcc
gaggaaagcagccgttcgcgccgccgtcgccgccgccgtcgcaagggcagcggcgaagag
gacaccgaggccgccaccagctcggacgacccgcccaacaccgtggtccacgtccgccag
ggcaaggacaaggaccgggagaaggaagccgagaagccggtccgcgacgaggtgcgcagc
gtgcgcggctccacgcggctggaggccaagcgccagcgccgccgtgacggccgcgaggcc
ggtcgccgccgggcgccgatcctgtccgaggccgagttcctcgcccgccgcgaagcggtc
gagcgcaccatggtggtcgccgagaagggcgacgccacgcagatcggcgtgctcgaggac
ggcgtgctggtcgagcacttcgtgacctcgtcgggcagcggctcgatcgtcggcaacgtc
tacctcggccgcgtgcagaacgtgctgccctcgatggaggccgcgttcatcgacatcggc
cgcggccgcaacgccgtgctctacgccggtgaggtggactgggacgccgccgggctggaa
ggcaaggcgcgcaagatcgagcaggcgctgtccaccggcgacagtgtgctggtgcaggtc
accaaggacccggtcgggcacaagggggcccggctgaccacgcagatctcgctgcccggc
cgcttcctggtctacgtgccagccgggggcgccaccggcatctcgcgcaagctgccggag
aacgagcgccgccgcctcaaggacatcctcaagcggatcgtgcccgaggacgcgggcgtg
atcatccgcaccgcctcggagggcatcgccgaggaggaactggaccgcgacgtgcgccgc
ctcaaggcgcagtgggacgtgatcaaggagaaggccgaggctggcaagggcaagaagtcc
ggcgcgccgacgctgctctacgaagagccggacctgctggtcaaggtggtccgcgacctg
ttcaccgaggacttcgccaagctcgaggtccagggcaacacggcgtgggagaccatccag
ggctacgtcgcgcacgtcgcgcccgacctggccgaccggctcaagcgctactccggcaac
ggcgacgtcttcgccgactaccggatcgacgagcagatcaccaaggcgctcgaccgcaag
gtgtggctgccctccggcggttacctggtcatcgaccgcaccgaggcgatgaccgtgatc
gacgtcaacaccggcaagttcaccggctccggcggcaatctcgaggagacggtgaccagg
aacaacctggagtcggccgaggagatcgtgcggcagctgcggctgcgggacatcggcggc
atcatcgtgatcgacttcatcgacatggtgctggagtccaaccgcgagctggtgctgcgg
cggctgaccgaatgcctcggccgcgaccgcacccgccaccaggtggccgaggtgacctcg
ctgggcctggtgcagatgacccgcaagaaggtcggcaccgggctgctggaggccttctcg
accacctgcgagcactgcaagggccgtggggtggtggtctccaccgaccaccagccgaag
aacggttccggcaacggcggtggcgggaacggcgggcaccagcacggttcgtcccggcgc
tcgcgtggccgcggcaacaaggccgaggagcagccgcagccggagccgaaggccaccgag
ccgccgaccccggtgcagcgtgagtcggtggtcaccgcggtgcaggcgatggcgaacgcg
tcgaagtcggccaagggcgagcacgaggacgccgaggcgaaggctcccgagctgaacggg
cacgtggcggaacgcgccgaagaggcgcaggaggtccccgccgagtccccggcgaccgcg
gctgcggaagcgcagcaggcctcgggcaccaccgagaacgctgagaaggccgagaaggcc
gaggccgccaaggcgcccgaggccccggcgaagcctgaggcgcctgaggccgctgaggcg
cccgagaccgccgcgaaggccgaggccgccgagaaggctccagagaaggccccagcggcg
gctcaggctgagccgtcccaggcggctgagcgggccgaggcggcgcagcagcaggccgaa
cagcctgaggcgtcttcccaggcgcctgaggctgctgagacatcccagacggctgagacg
tctgaggtgcccgaggtgtccgtgcccgctccggcggcgaagacgacccggcggcgtgcc
cgccgggtggcctcgcggccggccggtccgccggtcaccgcgggcgagaacagccagtag
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