Acinetobacter calcoaceticus: BUM88_01950
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Entry
BUM88_01950 CDS
T05452
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
acal
Acinetobacter calcoaceticus
Pathway
acal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BUM88_01950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acal03019
]
BUM88_01950
03009 Ribosome biogenesis [BR:
acal03009
]
BUM88_01950
Enzymes [BR:
acal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BUM88_01950
Messenger RNA biogenesis [BR:
acal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BUM88_01950
Ribosome biogenesis [BR:
acal03009
]
Prokaryotic type
rRNA processing factors
BUM88_01950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
RBM39linker
Motif
Other DBs
NCBI-ProteinID:
AQZ80478
LinkDB
All DBs
Position
complement(404259..407600)
Genome browser
AA seq
1113 aa
AA seq
DB search
MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GAGRQGFLSMREIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISL
AGRYLVLMPNNPKGGGISRQISGSVREELKEILASLNLPRGMSVIVRTAGIGRTQEELQL
DLQHLLDLWAQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYN
FVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSID
INSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKL
REATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSI
MRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSSVRVTILPHPHLETPHY
EIQYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHTHAAPAANNTAGQKKVN
QPAQPSAAQPSTQKAASPCAWLENLFVQKQAKTVDQSRSAQNAAASIEQMVNTGAVSRGQ
FGQVVVPAVAEVVSAPSNNAYISQSPAKQEVRENVEKDEKVQQRPNNKKRKHKEQREQHH
HTQEPQQQQQPQQVHEEVVQLSRQEQRELKRQQKRPHSDQPHPQHQNDGQQTENAVPRRD
RNNQQRPNRPNRHRDPSVLNENQNAPAPVVVDEKQIKVDLIDAPKHEVMNTALVINVDQA
QSEIIALTPEQPVKRTETAPVVEVVQESAPAPVAVVEETVTAEAEETTPPPAHNKNQPQI
QRASNDPRMRRREQRNAKRAKAAVPSIAPSQIPTLAQYTIGSLIRHVYGEDCTVLIEQFG
LVPTFNRALLKFAEQYASTLVTEVASDAEDKKPVTRDAELPSNKPSQEAEPAPVLALTPQ
KESTPRVANDPRERRRLAKLAAEQAFEQVKQQHSAPEEAAPVAPVVEETVVAPVAETQAP
VESKQQPLELDQVAEVAQSETNAEEAPATTVVEAPAVKQPRAKAKAATEQAVAPVEANAE
VESEDSKADLDKPNRPPRRPRGRPPKKANPVAE
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgattaatgcaactcacgcagaagaagtccgcgttgcacttatcact
ggtaatcgtctttacgattttgatttagaaaatcgtacccgagaacagaaaaaatccaat
atctataaaggccatgtaacccgcgtagaaccttctttagaagctgtgtttgttgaatat
ggcgcaggtcgtcaaggcttcttgtctatgcgtgaaattgcgaacagctatttccaagca
gacccgcgacaaacttcaaacattcgtgaactcatcactgaaggtactgaattacttgtt
caggttgaaaaagaagaacgtggtaacaaaggcgcagccctttctacattcatttcactt
gcaggacgttatttggttcttatgccaaacaacccgaaaggcggtggtattagccgtcaa
atttcaggttctgtacgtgaagaattaaaagaaattttagcttctttaaatttacctcgc
ggcatgagtgttattgtgcgtaccgcaggtattggccgtactcaagaagaattacagtta
gatttacaacatttgcttgacctttgggcacaaatccaaggcacagcaagttctggcccg
tctccaatgcttgttcaccaagaagctggtgtagtaactcgtgctatccgcgattactta
cgtgatgacgttgcagaaattttaattgatagtgaacaagcctataacgaagcgtataac
tttgttaaagcagttatgcctcgtcaattagacaaacttaaaacttatactttaaacgag
ccattatttgctcattttggtattgaaagccaaattcaaactgcttacgagcgtgaagta
aaacttccttctggtggttcaatcgtaattgaccagaccgaagctttagtttcaatcgac
attaactctgcgaaatcgactcgtggacatgacgttgaagaaactgcgcttaatacaaac
ctagaagcagcagaagaaattgctcgccaacttcgtcttcgtgacattggcggtttagtt
gtgatcgactttattgacatgactaaagaacgcaaccaacgcatggttgaagcaaaactt
cgtgaagcaacacaaagcgaccgtgcgcgtatccagtttggccaattatctcgttttggc
ttaatggaaatgagccgccaacgcttacgtccatcacttgaagaagcaactggatatgtt
tgcccacgctgtcatggcacaggtatggtccgtgacttacgctcactttcgctttcaatt
atgcgtaaagtagaagaaattgcacttcgtgaacgtcatggtgaagtacaagtagaagtt
cctgttgaaattgcagcattcttactcaatgaaaaacgccatagccttgtttatttagaa
caaacttctagtgttcgtgtgactattttacctcacccacacttagaaacacctcattat
gaaattcagtacaatccagatggatttgcaccatctagctatgagcgtactgaagcaact
cgttcaagcgagaaagagttaggttatgaatcttctgaatggcatttagaagaagcagat
catggccatactcatgcagctcctgctgcaaacaacacagccggtcaaaagaaagtaaat
caaccagctcaaccttctgctgctcaaccaagcactcaaaaagcagcgagcccttgtgca
tggttagagaacctttttgttcaaaaacaagctaaaactgttgaccaatctcgttcggca
cagaacgctgctgcgtcaattgaacaaatggtgaatactggcgctgtaagccgtggccag
tttggacaagttgtagtaccagcagttgctgaagttgtttcggcgccatctaacaatgct
tatatttcgcaatctcctgctaaacaggaagttcgtgagaatgttgaaaaagacgagaaa
gtacaacaacgtccaaacaacaaaaaacgtaagcacaaagagcaacgtgagcaacatcac
catactcaagagccacaacaacagcagcaaccacaacaggttcatgaagaagttgtacag
ttatcacgtcaagaacaacgtgagttaaaacgtcaacaaaaacgtccgcactctgatcag
ccacatccacagcatcaaaatgatggacaacaaactgaaaatgccgtgccgcgtcgtgac
cgtaataatcaacaacgtccgaaccgtccaaatcgccaccgcgatccaagcgtattaaat
gaaaatcaaaatgcgccggcaccagtagttgttgatgagaaacaaattaaggttgatttg
attgatgctccaaagcatgaagtcatgaatacagccttagtgatcaatgttgatcaggca
caaagcgaaattatcgctttaactcctgagcagcctgttaaacgtactgaaacagcacct
gttgttgaagtcgttcaagagtcggctccagcacctgttgctgttgtagaagaaacggta
actgctgaagcagaagaaactactcctcctccagcacacaacaagaatcaaccgcaaatt
caacgtgcgagtaatgatcctcgcatgcgtcgccgtgaacaacgcaacgcaaaacgtgct
aaagctgcggtaccgtctattgccccatcgcaaattccaactttggcgcaatacacaatt
ggtagcttgattcgtcatgtttatggtgaagactgcacagtattgattgaacaatttggt
ttagttccaacgtttaatcgtgcattgctgaaatttgccgaacagtacgcaagtactcta
gtaacagaagttgcgtctgatgctgaagacaagaagcctgttactcgtgatgcagagctt
ccaagcaacaaaccatcacaagaagcagagcctgcgcctgtacttgcattgacgccacaa
aaagagtcgacaccacgtgttgctaatgatccacgtgaacgtcgtcgtttagcaaaactt
gctgctgaacaagcttttgagcaagttaaacaacaacactctgcaccagaagaagctgct
ccagtagctccggttgttgaagaaactgttgttgctcctgttgctgaaacgcaagcacct
gttgagtcaaaacaacaaccgcttgagcttgatcaggtggctgaagtagcgcaaagtgaa
acaaacgcagaagaagcaccagcgacaacggttgttgaagctccggctgtgaaacaaccg
cgagcaaaagccaaagcagccactgaacaagctgtagcaccagtagaagctaatgcagag
gttgaatcagaagattctaaggcagatctggacaaaccaaatcgccctcctcgtcgtcct
cgtggtcgtccaccaaagaaagcaaatcctgtagctgagtaa
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