Acinetobacter pittii: BDGL_003310
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Entry
BDGL_003310 CDS
T01684
Symbol
rne
Name
(RefSeq) ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
acc
Acinetobacter pittii
Pathway
acc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BDGL_003310 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acc03019
]
BDGL_003310 (rne)
03009 Ribosome biogenesis [BR:
acc03009
]
BDGL_003310 (rne)
Enzymes [BR:
acc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BDGL_003310 (rne)
Messenger RNA biogenesis [BR:
acc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BDGL_003310 (rne)
Ribosome biogenesis [BR:
acc03009
]
Prokaryotic type
rRNA processing factors
BDGL_003310 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
RBM39linker
Motif
Other DBs
NCBI-GeneID:
11637976
NCBI-ProteinID:
YP_004997578
UniProt:
F0KLY4
LinkDB
All DBs
Position
complement(3555292..3558615)
Genome browser
AA seq
1107 aa
AA seq
DB search
MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GAGRQGFLSMREIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISL
AGRYLVLMPNNPKGGGISRQISGSVREELKEILASLNLPRGMSVIVRTAGIGRTQEELQL
DLQHLLDLWAQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYN
FVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSID
INSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKL
REATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSI
MRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSSVRVTVLPHPHLETPHY
EIQYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHTHAAPVANNAANQKKAN
QAAQPAAQASAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGAVSRGQF
GQVVAPAVAEVTSAPSNNAYISQSPVKQEARENVEKDDKVQQQRPNNKKRKHKEQREQHQ
HHHNQEPQQQQVHEEVVQLSRQEQRELKRQQKRQQQDQPHAQHQNDGQQAEHAVPRRDRN
NQQRPNRPNRHRDPSVLNENQNTPAPAVVDEKQIKVDLIDAPQHEVMNTALVINVDQAQS
EIIALTPEQPVERTEKAPVVEATQEPAPAPVVAVEETVTAEAEAPQPKAEKTQPQVQRAS
NDPRMRRREQRNAKRAKAAAPSIAPSQIPTLAQYTIGSLIRHVYGEDCTVLIEQFGLVPT
FNRALQKFAEQYASTLVTEVASEAEDKKPVTRDAELPSNKPSQEAEPAPVLPLTPPKEAT
PRVANDPRERRRLAKLAAEQAFEQVKQQHSAPEEAAPVAETVEEAVVAPTAETQAPVESK
QQPLELDQETEVAANIEETPAEPAIEAPVAKQPKAAAKAKAATEQAVEPTEAPAESESED
SKADKDKPSRPRRPRGRPPKKANPVAE
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgattaatgcaactcacgcagaagaagtccgcgttgcacttatcact
ggtaatcgtctttacgattttgatttagagaatcgtacccgagaacagaaaaaatccaat
atctataaaggccatgtaacccgcgtagaaccatctttagaagctgtttttgttgaatac
ggcgcaggccgtcaaggcttcttgtctatgcgcgaaattgctaacagttatttccaagca
gacccacgacaaacttcaaacattcgtgaacttatcactgaaggtactgaattacttgtt
caagtcgaaaaagaagaacgtggcaataaaggtgcagctctttctacctttatttcactt
gcaggacgttatttggttcttatgccaaacaacccgaaaggtggcggtattagtcgtcaa
atttcaggttctgtacgtgaagaattaaaagaaattttagcttctttaaatttaccacgt
ggtatgagcgttattgtacgtaccgctggtattggccgtacccaagaagaattacagtta
gacttacagcatttgcttgacctttgggcacaaatccaaggcacagcgagctctggccct
tctccaatgctagttcatcaagaagctggtgttgttactcgtgctatccgcgattattta
cgtgatgatgttgcagaaattttaattgatagcgaacaggcttataacgaagcttataac
tttgttaaagcagtgatgcctcgtcaattagacaaacttaaaacttatactttaaacgag
ccattgtttgctcattttggtattgaaagtcaaattcaaactgcttatgaacgtgaagta
aaacttccttctggcggttcaattgtgattgaccagactgaagctttagtttcaatcgat
attaactctgcgaaatcgactcgtggacatgacgttgaagaaactgcgctgaatactaac
ttagaagcagcagaagaaattgctcgccaacttcgtcttcgtgacattggtggtttagtt
gtaatcgatttcatcgatatgactaaagagcgcaaccaacgtatggttgaagcaaaactt
cgtgaagcaacacaaagcgatcgcgcacgtattcagtttggacaactttctcgttttggc
ttaatggaaatgagccgtcaacgcttacgtccatctcttgaagaagcaacaggttatgtg
tgccctcgctgtcatggtacaggcatggttcgtgacttacgctcactttcgctttctatt
atgcgtaaagtagaagagatcgcgcttcgtgaacgtcatggtgaagtacaggtagaagta
cctgttgaaattgcagcattcttactcaatgaaaaacgtcatagtcttgtttatttagaa
caaacttctagtgttcgtgtgactgttttgcctcacccgcacttagaaacccctcactac
gaaattcagtacaatccagatggatttgcaccatctagctacgaacgtactgaagcaact
cgttcaagtgaaaaagagttaggttatgaatcttctgaatggcatttagaagaagccgat
catggccatactcatgctgctcctgttgccaataacgcagccaaccaaaagaaagcaaat
caagcagctcaacctgctgctcaggcaagcgctcaaaaagcagcaagcccttgtgcatgg
ttagaaaacctttttgtgcaaaagcaagctcaaacagttgatcaatctcgctcagcacaa
aatgctgctgccgcaattgaacaaatggtgaatactggcgctgttagccgtgggcagttt
ggacaagttgtagcaccagcagttgcagaagttacttcggctccatctaacaatgcttat
atttctcaatctcctgttaagcaggaagcacgtgagaatgttgaaaaagacgataaagta
caacagcagcgtccaaacaacaaaaaacgtaagcacaaagagcaacgtgaacaacatcaa
catcaccacaatcaagaaccacagcaacaacaggttcatgaagaagttgtacagttatca
cgccaagagcaacgtgaattaaaacgtcaacaaaagcgtcaacaacaagatcagccgcat
gcgcaacatcaaaatgatgggcaacaagctgaacatgctgtaccgcgtcgtgaccgtaat
aatcaacaacgtccaaaccgcccgaatcgccaccgcgatccaagcgtattaaatgaaaat
caaaatacgccagcaccagcagttgttgatgaaaaacaaattaaggttgatttgattgat
gctccacagcatgaagtcatgaatacagccttagtcatcaatgttgatcaagcacaaagc
gaaattattgctttaacgcctgagcaacctgttgaacgcactgaaaaagcacctgttgtt
gaagctactcaagaaccagctccagcaccagttgtggcagtggaagagacggtaactgct
gaagcagaagctcctcaaccaaaggctgagaaaactcaaccgcaagttcaacgtgcaagt
aatgatcctcgtatgcgtcgccgtgaacaacgcaatgcaaaacgtgctaaagctgctgca
ccatcaattgccccatcgcaaattccaacgttggcgcaatatacaattggtagcttgatc
cgtcatgtttacggtgaagactgcacagtactgattgaacagtttggtttagttccaaca
ttcaatcgtgcattgcagaaatttgcagagcaatatgcaagtactctagtgactgaagtc
gcatctgaagctgaagacaaaaagcctgttactcgtgatgccgagcttccaagcaataag
ccttcacaagaagcagaacctgcgccagtacttccgttgacgccaccaaaagaagcgaca
ccacgtgttgctaatgatccgcgtgaacgccgtcgtttagcgaaacttgcagctgaacaa
gcttttgagcaagttaaacaacaacattctgcaccagaagaagctgcccctgtagctgag
actgtggaagaagccgttgttgctcctactgctgaaacacaagcacctgttgaatcaaag
caacaaccgcttgagcttgatcaggaaactgaagtagcagctaatatagaagagacacca
gctgaacctgcaatagaagctccggttgcaaaacagccaaaagcagctgcaaaagccaaa
gcagctacagaacaagctgtagagccaactgaagctcctgccgagagtgaatcggaagat
tctaaagctgataaggacaaaccaagtcgtcctcgtcgccctcgcggccgtccaccaaag
aaagcaaatcctgtagctgagtaa
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