Achromobacter sp. 77: H4P35_05925
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Entry
H4P35_05925 CDS
T08458
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
acho
Achromobacter sp. 77
Pathway
acho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4P35_05925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acho03019
]
H4P35_05925
03009 Ribosome biogenesis [BR:
acho03009
]
H4P35_05925
Enzymes [BR:
acho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H4P35_05925
Messenger RNA biogenesis [BR:
acho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H4P35_05925
Ribosome biogenesis [BR:
acho03009
]
Prokaryotic type
rRNA processing factors
H4P35_05925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_Tnp_IS1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
UDG76886
LinkDB
All DBs
Position
complement(1318310..1321393)
Genome browser
AA seq
1027 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDLPQGMSIIARTAGIGRNVEELQ
WDLSYLLQLWTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAIVIDHTEALVSV
DVNSARSTRGADIEETALRTNSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATYLLNEKRADITKMEARLKVNLMLIPNKHLETPH
HHIERLRHDDPRLEEVKTSFELVEAPATDAPWQPRESEIKSRPEALVKGITPSQPAPVST
PAAPAAAPAAPAAGAGLGGLFKRLVGWLTGGSEPAKPAPAAAEETAKRAAPARGKGRNGH
DGQDRRGERHGSDRNRNRRGEGRGEGAEATEGGRHHVRGNRRSDAERGERNNRGEGRGER
DTPAATQAALASARPEQTPELNGEDTGAGRNRRRGRGRNRREEGQADAPMSEQESMVAAL
AQTVATALPDTKSDAKPAAEAAMDTADADDLSADAIPGVEGAEGAADPERKRRRRRSRRG
RRSQDEAGLAGSDEQQEDGAEDAGEQQAEGVDAQAAEPVQTAAAEAAPAPAQQVQAPAQP
VQTAAQPEQAPAEPVQAPKAEPVQAAAEPAVEPAVEPLTQAPAEPAAQPVQTAPEATPPV
AVQPASEASVPAAPVQAPVEAPAVEPVVPAPAAAPAPAPVAPAPAPAAPASAQQPIVVPA
AAPAAKAQALHDVVNAAGLKWVETDPERHAQTQQRIAASYAPARLGRERKPVTPVSNEPL
VQVETRH
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgtttaatgcgacgcatcaggaagaattacgcgtcgctatcgtcgat
gggcaaaaactcatcgaccttgacatcgagactgccggccgcgaacagcgcaaaggcaac
atctacaaaggtgtcatcacccggatcgaacccggcctcgaagcttgcttcgtcaactac
ggcgaggatcgccacggctttctgcccttcaaggaagttgcccgcagcttcttcaaggaa
ggcgtcgatgtccgcaccgcccgtatccaggacgctctgcgcgaaggccaggaactgatc
gtccaggtcgaaaaggaagaacgcggcaacaagggcgctgccctgaccacgttcatctcg
ctggccggccgctacctggtcctgatgcccaacaacccccgcggtggtggtgtttcgcgc
cgcgtcgagggtgaggaccgccaggaactgcgcgacacgatggagcagcttgatctgccc
cagggcatgagcatcatcgctcgcaccgcaggcatcggccgcaacgtcgaagagctgcaa
tgggacctgtcctatctgctgcagctctggaccgccatcgacggcgccgcgcgcgacaac
tccgcgcccatcctgatctacctcgaatccagcctggtcatccgcgcgatccgcgattac
ttctcgccggaaatcggcgagatcctgatcgataccgacgagatcgccgaccaggccacc
gccttcatgagcgtggtgatgccggacaacgtccagcgcgtcaaacgctaccgtgacgac
atccccctcttctcgcgcttccagatcgaacaccagatcgagacggcctactcgcgcacc
gtgcaactgccctcgggcggcgccatcgtcattgaccacaccgaagcgctggtgtccgtc
gacgtgaactcggcccgctcgacccgcggcgccgacatcgaggaaaccgcgctgcgcacc
aactcggaagcggctgacgaagtggcccgccagttgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaagacagcaagaaccagcgcgccgtcgaacagcgc
ctgcgtgatgccctccatttcgaccgtgcccgcgtccagatgggcaagatctcgcgcttt
ggcctgatggaactgtctcgccagcgcctgcgccccgccctgaacgaaggctcgcacatc
acctgcccgcgctgcaacggcaccggcgtgatccgcgacgccgagtccagcgccctgcac
gtgctgcgcctgctgcaggaagaagccatgaaggagaacaccgcggcggtccacgcccag
gtgcccgtcgacgtggccacctacctgctgaacgaaaagcgcgccgacatcaccaagatg
gaagcccgcctgaaggtcaacctgatgctgatccccaacaagcatctggaaacgccgcac
caccacatcgagcgcctgcgccacgacgatccccgcctggaagaagtgaagaccagcttc
gaactggtggaagcgccggccacggacgcgccctggcaaccccgcgaaagcgaaatcaag
tcgcgcccggaagccctggtcaagggcatcacgccctcgcagcccgctcctgtctccacg
cccgcagcgccggccgcagcacctgccgcgcccgcagcaggcgccggtctgggcggtctg
ttcaagcggctggtcggctggctgaccggcggctccgaacccgccaagcccgcgcctgcc
gccgccgaggaaaccgccaagcgcgccgctccggcccgtggcaagggccgtaacggtcac
gacggccaggaccgccgcggtgaacgccacggttccgaccgcaaccgcaatcgccgcggc
gaaggccgtggcgaaggcgccgaggccaccgaaggcggccgtcaccacgtgcgtggcaat
cgccgctcggacgccgaacgcggcgaacgcaacaaccgtggcgaaggccgcggcgagcgc
gacacgccggccgccacccaggcagccctggcgtccgcccgtcctgaacaaacccctgag
ctcaatggcgaggacaccggcgcaggccgcaaccgccgtcgtggtcgtggccgcaaccgc
cgcgaggaaggccaggccgacgcgccgatgagcgaacaggaaagcatggtcgccgcgctg
gcccagacggtcgccaccgcgctgcccgacaccaagtcggatgccaagcccgccgccgaa
gctgccatggacaccgctgacgccgacgatctgtccgccgacgcgatcccgggcgttgaa
ggcgccgaaggcgcggccgatccggagcgcaagcgccgccgccgccgcagccgccgtggc
cgccgcagccaggacgaagctggcttggccggcagcgacgagcagcaggaagacggcgcc
gaagacgctggcgagcagcaggccgaaggcgttgacgcccaagccgctgagccggttcaa
accgcagccgccgaggcagcgcccgccccggcccagcaggttcaagcgccggcccagccc
gtgcagaccgccgcgcagcccgagcaagccccggccgaaccggttcaagcgcccaaggct
gaacctgtccaggccgccgcagagcctgcagtcgagcccgcagtcgaacccttgacccag
gccccggctgaacccgccgcccaaccggtccagacggctcccgaagcgaccccgccggtc
gccgtgcaacccgcgagcgaggcttcggtccccgccgcgccggtgcaggcgcccgtggaa
gcgcccgccgtcgagccggtggtcccggccccggcagctgcgcccgcccccgcgcccgtc
gcgccggcccccgcgccggcggctccggccagcgcgcagcagcccatcgtggtgcccgcc
gctgcccccgccgccaaggcgcaggccttgcacgacgtggtcaacgccgctggcctgaag
tgggtggaaaccgatccggaacgccacgcacagacgcagcaacgcattgccgcctcgtat
gcgccggctcgcctgggccgcgagcgcaagcccgtgacgcccgtctcgaacgagccgctg
gttcaggtcgaaacgcgccactaa
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