Acidaminococcus fermentans: Acfer_1620
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Entry
Acfer_1620 CDS
T01151
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
afn
Acidaminococcus fermentans
Pathway
afn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Acfer_1620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afn03400
]
Acfer_1620
Enzymes [BR:
afn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Acfer_1620
DNA repair and recombination proteins [BR:
afn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Acfer_1620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
Helicase_C
DEAD
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_30
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ADB47977
UniProt:
D2RLM5
LinkDB
All DBs
Position
complement(1788619..1791897)
Genome browser
AA seq
1092 aa
AA seq
DB search
MTNTLTKLLQQEKNVREGADLWQKTPGPLQLTGLTGSVKAGFLCALQETVQAAQPLVILT
VNRESIRAQRRELAHFYPDLAMRELYPASLIHGQVDTRNEQVMAERAAALEMIVRKEPGI
IFATAEAAIQKLPQPESLVRENLKLAVGQEIEQSLVVEKLVKAGYERTEQVDTLGQVAVR
GDILDVFPINGKDSVRIEWFDNTIDAMKRFDLDTQRSIGTISQVGIMPLAVPNQEISASL
FQYLSADQLAVLDEPVAFFEECKKSWGDNREFADQLLDQETMIQQAGETHLLTVSDLGHP
YFPQAPRIHVQVRAMAPYNKNTDLLQKDLKGWLDQGIHPLIMMGTRDKAAGLAESLKGAG
LPMAFAGQFQGVPETGGQVFAGSLTNGFYFWDEKWLLLTESDIFGAQKKRRLTKTKGKGP
ALNYFSDIKAGDYVVHDVQGIGRYMGVETIEVNGVHRDYLQLQYAGGDKLHVPVEQVGLL
HKYVGNEGTPPKLSNMGRKDWQKATRKAQKAITILATELLRLYAQRKITPGHAFAPDTHW
QKEFEDSFPFEETPDQLKAIAEIKADMEKPVPMERLLCGDVGYGKTEVAIRAAFKAVMDG
KQVAVLAPTTVLAQQHLLTFTQRMGSFGVRVEMLSRFRTPKQQREIMERVAEGKIDVLIG
THRILNPDVEFHDLGLLIIDEEQRFGVAQKEKIKQRSAGIDVLTLSATPIPRTLHLALVK
GRDMSIIESPPEDRLPVETYVAEYDDGMVREALEREIRRGGRIYYVHNRIEGLSRIAAHL
RELVPGITIGLAHGRMTEDELEDVMLGFYQGDFDVLLSTTIIENGLDVPLANTIIIDGAE
NFGLSQLYQMRGRVGRSSRLAYAYFLYKKDRVLSEVAQKRLQAIRDFTELGAGFKIAMRD
LEIRGAGNLLGAEQHGQITGVGFDLYCRLLEKTINTLQNGGNPDEPVPPDPVIEMKLDAY
IPDDYIDNPRYKLELYHRLGDMKYEDRNDLMDEIIDRFGTPPTQVENLWRVAALRDVCRK
LRIISVAVRPGEIRLAFDPHSKANPDVLQALIREYVPRATLKMGPQPQFVLKTKGMEEQP
LSWLEKNLPRML
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatacactgacgaaactgttgcagcaggagaaaaatgtccgggaaggggcagat
ctctggcaaaagacccccggtcccctgcagctgaccggcctcacaggctctgtgaaagcc
ggctttttgtgcgccctccaggaaacggtccaggcggcccagcccctggtgatccttacg
gtgaaccgggagagcatccgggcccagcgccgggaactggcccatttctatccggacctg
gccatgcgggaactgtacccggccagcctgatccacggccaggtggatacccggaacgaa
caggtgatggcggaacgggcagcggccctggaaatgatcgtccggaaggagccgggaatc
atcttcgccaccgcggaagccgccatccagaaactgccccagccggaatccctggtccgg
gaaaacctgaaactggcggtggggcaggagatcgaacagtccctggtggtggaaaaactg
gtgaaggccggctacgaacggacggaacaggtggataccctgggtcaggtggcggtccgg
ggggatatcctggacgtgttccccatcaacgggaaagattcggtgcggatcgaatggttc
gacaacaccatcgatgccatgaaacggttcgaccttgacacccagcggagcatcgggacc
atctcccaggtggggatcatgccactggcggtcccaaaccaggaaatcagtgcctccctg
ttccagtacctgtcggcggaccagctggcggtactggatgaacctgtagccttctttgaa
gaatgcaaaaaaagctggggagacaatcgggaattcgccgaccagctcctggaccaggaa
accatgatccagcaggccggggaaacccatctgctgacggtcagcgacctgggccatccc
tattttccccaggctccccgtatccatgtgcaggtccgggccatggctccctacaataaa
aacaccgacctgctccagaaagacctgaagggctggctggaccagggcatccatcccctg
atcatgatggggacccgggacaaggccgcaggcctggcagaaagcctgaaaggagccggt
ctgcccatggcctttgccggccagttccagggcgtaccggaaaccgggggccaggtcttt
gccggcagcctgaccaacggcttctatttctgggatgaaaaatggctgctgctgacggaa
agcgacatcttcggggcccagaagaagcgccggctcaccaaaacaaagggcaaaggaccg
gccctgaactatttctccgacatcaaggccggggattatgtggttcatgacgtccagggc
atcgggcggtacatgggggtggaaaccatcgaagtgaacggggtccaccgggattacctc
cagctccagtacgccggcggggacaagctccatgtgccggtggaacaggtgggcctcctc
cacaaatacgtgggcaacgaggggacgccgcccaaattgtccaacatgggccggaaggac
tggcagaaagccacccggaaagcccagaaggccatcaccatcctggccacggaactgctt
cggctctacgcccagcggaagatcaccccgggccatgcctttgccccggatacccactgg
cagaaagaattcgaggacagcttcccctttgaggaaaccccggaccagctgaaggccatt
gctgagatcaaggcggacatggaaaagcccgtacccatggaacggctcctctgcggggac
gtgggctacggcaagaccgaagtggccatccgggccgccttcaaggccgtcatggacggc
aaacaggtggcagtactggctcccaccaccgtcctggcccagcagcacctgctgaccttt
acccagcggatgggctccttcggggtgcgggtggagatgctcagccggttccggaccccc
aaacagcagcgggagatcatggaacgggtggcggaaggcaagattgacgtgcttatcggc
acccaccggatcctgaacccggatgtggaattccacgacctgggactgttgatcatcgat
gaggaacagcggttcggggtggcccagaaagaaaaaatcaagcagcgcagcgccggcatc
gacgtgctgaccctctccgccacccccattccccgtaccctccacctggccctggtgaag
ggacgggacatgagcatcatcgaatcccctccggaagaccggctgccggtggaaacctat
gtggccgaatatgatgacgggatggtccgggaagccctggaacgggaaatccgccggggc
ggacggatctactatgtccacaaccggatcgaggggctgagccggatcgctgcccatctc
cgggaactggtccccgggattaccatcggtctggcccatggacggatgactgaggacgaa
ctggaagatgtgatgctggggttctaccagggggacttcgacgtgctcctgagcaccacc
atcatcgaaaacggcctggacgtgcccctggccaacaccatcatcatcgacggggcggaa
aacttcggactgtcccagctgtaccagatgcggggacgggtgggccggtcctcccggctg
gcctatgcctatttcctgtacaaaaaggaccgggtgctcagtgaagtggcccagaaacgg
ctccaggccatccgggactttacggaactgggggccggcttcaagatcgccatgcgggac
ctggagatccggggggccgggaacctgctgggggccgaacagcacggacagatcaccggg
gtgggcttcgacctgtactgccggctgctggaaaagaccatcaacaccctccagaacggc
ggaaacccggatgaacccgttccgccggatccggtgatcgaaatgaagctggatgcctac
atcccggacgattatatcgacaatccccggtacaagctggaactgtaccaccgtctggga
gacatgaagtatgaggacaggaacgatctgatggatgagatcatcgaccggttcggcacg
ccccccacccaggtggagaacctgtggcgggtggcggctctccgggatgtgtgccggaag
ctccggatcatcagcgtggcggtgcggccgggagaaatccggctcgccttcgatccccac
agcaaggccaatcccgatgtgcttcaggccctgatccgggaatacgtgccccgggccaca
ctgaagatggggccccagccccagttcgtgctgaaaaccaaaggcatggaggaacagccc
ctttcctggctggaaaagaacctgccccgcatgctataa
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integrated database retrieval system
