Candidatus Puniceispirillum marinum: SAR116_1034
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Entry
SAR116_1034 CDS
T01207
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
apb
Candidatus Puniceispirillum marinum
Pathway
apb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAR116_1034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apb03019
]
SAR116_1034
03009 Ribosome biogenesis [BR:
apb03009
]
SAR116_1034
Enzymes [BR:
apb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SAR116_1034
Messenger RNA biogenesis [BR:
apb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAR116_1034
Ribosome biogenesis [BR:
apb03009
]
Prokaryotic type
rRNA processing factors
SAR116_1034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ADE39277
UniProt:
D5BSN0
LinkDB
All DBs
Position
1093637..1096177
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AA seq
846 aa
AA seq
DB search
MTKRLLIDARQSEETRVVLLSGTRIEDFDYETENRKQLKGNVYLARVTRVEPSLQAAFVE
YGGNRQGFLAFSEIHPDYYRIPIEDREALLAADKAEAQDEDNEKDAEDGLETVGGGDGDE
DDIRPARKVRKYKIQEVISRKQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNNSRG
GGVSRKITNVADRKRLKTVVGGLDIPDGMAVIVRTAGSKRTKTEIARDYAYLSKLWNDIR
ERTLESQAPCIIHEEGNLIKRSIRDIYTSEVEEILVEGEEAYKAARNHIKMLIPSHVKKV
KKHEDAIPLFQHYRVESQMDTIHSPQVTLKSGGYLVINQTEALVAVDVNSGRSTRERNIE
ETALKTNLEAADELARQLRLRDLSGLIVVDFIDMEENRNQNAVERRMKDAMRNDRARIQI
GSISHFGLLEMSRQRLRLSINESTSDLCPHCEGTGRVRSVDTAALQTLRSIEDEAQKGKM
DEMHITVHRDIALFILNHKRDALAELESRYGITIMLLSDDTLISPEYRIERVGWQGKAPQ
QQNRRSPKPANNNNNNNSNSNRADNKDAKNDNASDTADASDSDDDAQTASEAGDNDATSD
EDQPKRRRRGRRGGRRRRRRNGNENGTNAENEGQTATSDAGSDNVASAEAATDAVSTADE
APAKKSRGRGRKATSVATEAASAETAEAQSNDNADTTASDTEGETKPKRQARKKAAPKAK
ADIDVTAADDAPAKAAPKKAATKKTAPKKATKASKKASAADADAVSETKVVAKKKPRTAA
AKKGTTKAASKAAASADAATAISNGSDHEATAADARAPISSAPQDVVDVDGDKPAGKTRR
GWWSRG
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagcgcctattgatagatgcacgacaatccgaagaaacgcgggttgtgcttcta
agtggaacacgcattgaagattttgactatgagaccgaaaatcgcaagcaactaaaaggc
aatgtatatctggcacgtgtaacgcgtgttgaaccgtccttgcaggcggcctttgtcgaa
tatggcggcaaccgccaaggttttcttgcctttagcgaaatccatccggactattaccgc
atccccatcgaagatcgtgaagccttgctggcggccgataaagccgaagcacaagatgag
gataacgagaaagacgccgaagacggtctggaaactgttggtggcggcgatggtgacgaa
gatgatatccgtccagcacgtaaagtccgcaaatataaaattcaggaagtcatttcccgc
aagcaaatcatgcttgttcaggttgtaaaggaagaacgtggcaacaaaggcgcagcgctg
accacctatctgtctcttgcaggacggtattgtgtgctgatgccaaataacagccgcggt
ggcggtgttagccgcaaaatcactaatgttgctgatcgcaaacggctaaagactgttgtt
ggtgggctggatattcccgatggtatggcggtgattgtccgtaccgccggctccaagcgc
accaaaaccgaaattgcccgtgattacgcctatctctccaaattatggaatgatattcgc
gagcgtacgcttgagtcccaagccccctgcatcattcatgaagaaggcaatctgatcaaa
cgatcaatccgtgatatctataccagcgaagtcgaagaaattctggttgaaggtgaagag
gcctataaagccgcacgcaatcacatcaaaatgctgattccaagccatgtgaaaaaggtc
aagaagcacgaagatgcgatcccactatttcagcattatcgcgtcgaaagccagatggac
acgatccatagcccgcaggtaacgctgaaatcaggtggttatcttgtgatcaatcagacc
gaagcattggtggctgtcgatgtcaattcggggcggtcaacacgcgaacgtaatatcgaa
gaaaccgccctcaaaaccaatcttgaagcggctgatgagttggcccgccagttacgcttg
cgtgatctgtcaggacttattgtcgtcgatttcatcgatatggaagaaaatcgcaatcaa
aatgcggttgaacgccgtatgaaggacgccatgcgcaatgaccgggcgcggatccagata
ggctctataagccatttcggactgctcgaaatgtcacgccagcgtctgcgtctcagtatt
aatgaatcaaccagtgatctatgcccgcattgtgaaggcactggacgggttcgttcggtt
gatacagccgccttgcaaacattacgctcgattgaggatgaagcgcagaaaggcaaaatg
gacgaaatgcacattaccgtgcatcgggacattgccctgtttatcctcaatcataagcgc
gatgcgctggccgaattggaaagccgttacggcattaccattatgctgttgtcagatgac
acattgatctcgccagaatatcggatcgaacgcgtcggatggcaaggcaaagccccgcaa
cagcaaaaccgtcggtcgccaaaaccagccaataataataacaataataatagtaatagt
aatcgcgccgataacaaagacgccaaaaatgataatgctagcgatacagcggacgcgtca
gattcagatgatgacgcacagacggctagtgaggctggtgacaatgacgccacgtcagat
gaagatcaaccaaaacggcggcggcgtggacgtcgtggtggcaggcggcggcggcggcgc
aacggcaatgaaaatggcacgaatgccgaaaatgaaggccagaccgcaacatcggacgct
ggaagcgataatgtagcatctgccgaagccgctactgatgccgttagcactgccgacgaa
gcgcctgccaagaaaagccgcggacggggacgtaaagccacatcggtggctaccgaagca
gcatcagctgaaacggcagaagcccaaagcaacgataacgctgatacaactgccagcgat
actgaaggtgagactaagccaaagcgtcaggcacgtaaaaaagctgcgccaaaggcaaag
gctgatattgatgtaacagccgcagatgatgcacctgccaaagccgcgccaaagaaagct
gcaaccaagaaaaccgcgccgaagaaagcaacaaaagcatcgaagaaagccagtgcggct
gatgccgatgctgttagcgagaccaaagttgtggcaaagaaaaagccccgcacagcggcc
gccaagaaaggcacgacaaaggccgccagcaaggccgccgcgtcagctgacgcagccaca
gctatcagcaatggttccgatcatgaggctaccgccgcagatgcacgggcaccgatcagc
tcagcaccgcaggatgtggtcgatgttgatggagacaagccagctggcaaaacccgccgc
ggctggtggtcacgcggctag
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