Asticcacaulis sp. ZE23SCel15: Q1W73_11980
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Entry
Q1W73_11980 CDS
T09907
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
asti
Asticcacaulis sp. ZE23SCel15
Pathway
asti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q1W73_11980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asti03019
]
Q1W73_11980
03009 Ribosome biogenesis [BR:
asti03009
]
Q1W73_11980
Enzymes [BR:
asti01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Q1W73_11980
Messenger RNA biogenesis [BR:
asti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q1W73_11980
Ribosome biogenesis [BR:
asti03009
]
Prokaryotic type
rRNA processing factors
Q1W73_11980
BRITE hierarchy
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
DUF5351
Motif
Other DBs
NCBI-ProteinID:
WKL56406
LinkDB
All DBs
Position
complement(2642968..2645763)
Genome browser
AA seq
931 aa
AA seq
DB search
MSKTMLIDATHSEETRVVVMNGSQVEEFDFESHSRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFNEIHPDYYQIPVADREKLMAELAAQAAANNHHDDDLEDEDDGDDLPDEE
RRLRAHLIKRYKIQEVIKRRQILLVQVVKEERGNKGAALTTYMSLAGRYCVLMPNTARGG
GISRKITNSADRKRLKVVAQSLDVPQGMGLIVRTAGAKRTKQEIKRDYDYLLRVWENIRE
TTLKSNAPSLIYEEEDLVKRAIRDLFDKDFEHVMVEGEEGYRSARDFMRMIMPSQAKKIQ
LYRANAPLFARHGIEDMLQKIYSPTVPLRSGGYLVINQTEALVAIDVNSGKSTKERNIEN
TALKTNLEAAEEAARQMRLRDLAGLVVIDFIDMDEPKNNRAVEKKLKDALENDRARIQMG
KISGFGLMEISRQRRRTGFLEGTTSPCPHCEGTGRIRSVNSSALGAMRAIDLEAMQNGAG
AVIIKLPQPVALYVLNEKQGHLAKLRDEWGLKVTVEIENHLSHAEFEITRTVHADEVEFV
PPVRSMPAADLLLDAADEVFEDEELDAEDEEAIAREDTDDDGAAERAQSSEDGRDSGRDG
RGRGRNRRRRRNGENGNRGLDGKAEAQTETVEAADTEADDDSDGSDGDSDDRRNRRRRRG
RRGGRRTGQENRPREPYGWVRARTPSLEEPYVWIDAFDEQQQKRVDPPVSDAIAASSSTT
ATETGLEGSGPVASKDAPRRERSRNRRNRSSAPDAMDVITPVGSVEVAPRALTEPVDGSA
PTSLVPEDVVSDVPARRKRPTRSRKVAAEAVADDTATLSVEVEPTIEPEAVAVTPEPVIA
EDDVKATRKPRARRKKTDVVAESLTETVTAPLAEAVNEAPEVEAPAPVDTTVSVLERPLV
EVQSFEPAPSVVDPAEITTPPEKPKRGWWRK
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaactatgttgatcgacgcgacccactcggaagaaactcgcgtcgtcgtaatg
aacggaagccaggtcgaagaatttgatttcgaaagccattccagaaaacaacttcgcggc
aacatttatctggccaaggtcacacgggtagaacccagccttcaggctgcgtttgttgaa
tatggcggaaatcgtcacggctttctggcattcaacgaaattcacccggactattaccag
attccggtggccgaccgtgaaaagctgatggctgaactggcagcgcaagccgcggccaat
aaccaccacgatgatgatctcgaagacgaagacgacggcgacgatctgccggacgaagag
cgccgcctgcgcgcccacctgatcaagcgttataagattcaggaagtcatcaagcgccgt
cagatcctgctggttcaggtcgtcaaggaagaacgcggcaataagggcgcggccctcacc
acctatatgtcgctggccggacgctattgcgtgctcatgcccaacaccgcccgtggcggc
ggcatcagccgtaagattactaattctgccgaccgtaagcgcctgaaagttgtcgcccaa
agccttgacgtgccgcagggcatgggcctgattgtccgcaccgccggggctaagcgcacc
aagcaggaaatcaagcgcgactatgattacctgctgcgcgtgtgggaaaacatccgcgaa
accacgctgaaatcaaacgcgccatcgctgatctacgaagaagaagatctggtcaaacgc
gccattcgcgacctgttcgataaggatttcgaacatgtcatggtcgaaggcgaagaaggt
taccgctcagcgcgcgatttcatgcgcatgatcatgccgtctcaggccaagaagatacag
ctttaccgtgccaatgcgcccctctttgcccgtcatggcattgaggatatgctgcaaaaa
atctactcgccgaccgtgcctctgcgctccggcggctatctggtgatcaaccagaccgaa
gcgctggttgccatcgacgtcaactcgggcaagtcgaccaaagagcgcaatatcgaaaat
accgcgctcaagaccaatctcgaggccgccgaagaagccgcacgtcaaatgcgtctgcgc
gatctggctggccttgtggttatcgacttcatcgacatggatgagccgaaaaacaatcgc
gcggttgaaaagaagctcaaagacgcgctcgaaaacgaccgcgcccgcatccagatgggt
aagatttccggctttggcctgatggaaatctcacgtcagcgccgccgcaccggcttcctt
gaaggcacgacctcgccctgcccgcactgcgaaggcacgggccgtatccgctcggtcaat
tcgtcagccctgggtgccatgcgtgccattgatttagaggccatgcaaaatggcgccggc
gctgtcatcatcaagctgccgcagcctgtggcgctttatgtgcttaacgaaaagcagggc
catctggccaagctgcgtgacgaatggggccttaaggtcaccgtcgaaattgagaaccac
ctctcccacgctgagtttgaaatcacacgaaccgttcatgccgacgaagttgagttcgtc
ccgccagtgcgctctatgccagccgccgaccttctgctcgatgccgccgacgaagtgttt
gaagacgaagaactcgacgccgaagacgaagaggccattgcccgcgaagacaccgacgat
gatggtgccgctgagcgtgcgcagtcaagcgaagatggccgcgatagtggacgtgacggt
cgcggtcgtggccgcaaccgccgccgccgccgcaatggcgaaaacggtaaccgcggactg
gatggcaaagctgaggcccaaactgaaaccgttgaagcggctgacactgaggccgatgac
gatagcgatggtagcgatggcgatagcgatgaccgccgcaaccgccgtcgccgtcggggc
cgtcgcggtggccgccgcaccggtcaggaaaaccgtccgcgcgaaccttatggctgggtg
cgcgcccgcacgccgtcgctcgaagaaccctatgtctggatcgatgccttcgatgagcag
cagcaaaagcgcgtagacccgcctgtatcagacgcgatcgcggcgagttcatcgacgaca
gccactgaaacaggacttgagggctcagggccggtcgcatctaaagacgcacccagacgt
gagcgttcgcgtaatcgccgtaaccggtcgtccgcccctgatgctatggatgtcatcacg
ccggttggttccgttgaggtcgccccgcgcgccctgaccgagccggtagatggttcggcg
ccgacatcgctcgtaccggaagacgtggttagtgacgtgcccgcgcgccgtaagcgtcca
acgcgttcccgcaaggtcgccgctgaagccgtggccgatgataccgcgaccctatccgtc
gaagttgaaccgacgatcgagcctgaagccgtcgcggtgacacctgagccggtgattgcc
gaagacgacgtgaaagccacgcgtaagccacgcgcccgtcgcaagaaaacggatgtggtg
gcggaaagcttaaccgaaacggtcacagcccccttggctgaggcggtaaacgaggccccg
gaagttgaagccccggccccggttgacactacggtgtctgtgctggagcggcccctggtt
gaggttcagtcctttgaaccggcaccatccgtggtcgatccggcggaaatcaccacacca
ccggaaaagcctaaacgcggctggtggcgcaaataa
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