Agrobacterium vitis VAT03-9: RvVAT039_28210
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Entry
RvVAT039_28210 CDS
T08809
Symbol
glyA1
Name
(GenBank) serine hydroxymethyltransferase 1
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv00260
Glycine, serine and threonine metabolism
avv00460
Cyanoamino acid metabolism
avv00630
Glyoxylate and dicarboxylate metabolism
avv00670
One carbon pool by folate
avv00680
Methane metabolism
avv01100
Metabolic pathways
avv01110
Biosynthesis of secondary metabolites
avv01120
Microbial metabolism in diverse environments
avv01200
Carbon metabolism
avv01230
Biosynthesis of amino acids
avv01240
Biosynthesis of cofactors
Module
avv_M00140
C1-unit interconversion, prokaryotes
avv_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
RvVAT039_28210 (glyA1)
09102 Energy metabolism
00680 Methane metabolism
RvVAT039_28210 (glyA1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
RvVAT039_28210 (glyA1)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
RvVAT039_28210 (glyA1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
RvVAT039_28210 (glyA1)
Enzymes [BR:
avv01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
RvVAT039_28210 (glyA1)
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GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
DegT_DnrJ_EryC1
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
BCH65605
LinkDB
All DBs
Position
1:3074642..3075931
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AA seq
429 aa
AA seq
DB search
MANTDAFFSRPLAETDPDIFGAIEKELGRQRHEIELIASENIVSRAVLEAQGSIMTNKYA
EGYPGKRYYGGCQFVDIAEELAIERAKKLFGVNFANVQPNSGSQMNQAVFLALLQPGDTF
MGLDLNSGGHLTHGSPVNMSGKWFNVVSYGVRQDDNLLDMDAVAESARKHKPKLIIAGGT
AYSRIWDWKRFREIADEVGAYLMVDMAHIAGLVAGNQHPSPFPHCHVATTTTHKSLRGPR
GGMILTNDEDLAKKFNSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFQDYAAQVVKNAKA
LSETLVKGGLDIVSGGTDNHLMLVDLRKKNATGKRAEAALGRAYVTCNKNGIPFDPEKPF
VTSGVRLGTPAGTTRGFKEAEFIEIGNLIVEVLDGLKVANSDEGNSAVEASVRDKVVGLT
GRFPMYPYL
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggccaataccgatgctttcttttcccgtccgcttgccgaaaccgacccggatattttt
ggtgcgatcgaaaaggagctcggtcgtcaacgccatgaaatcgagctgatcgcgtccgaa
aatatcgtctcgcgcgccgtgctggaagcgcagggctcgatcatgaccaacaaatatgcc
gagggctatccgggcaagcgctattatggcggctgtcagttcgtggatattgccgaggaa
ttggcgattgagcgcgccaagaagctgtttggcgtcaattttgccaatgttcagcccaat
tccggttcgcagatgaaccaggccgtgttcctggcactgttgcagccgggcgataccttc
atgggtctcgacctgaattccgggggccatctgacccacggttcgccggtcaacatgtcc
ggcaagtggttcaacgtcgtctcctatggcgtgcgtcaggacgataatcttctggacatg
gatgcggtggctgaatcggctcgcaaacacaagcccaagctgatcatcgccggtggcaca
gcctattcgcggatctgggactggaagcgcttccgcgagatcgccgacgaagtcggcgcc
tatctgatggttgatatggcccatatcgccggtctggttgccggtaaccagcatccgtcg
ccgttcccgcattgccacgtcgccaccaccacgacccacaagtcgctgcgtggcccgcgt
ggtggtatgatcctcaccaatgacgaggatctggccaagaaattcaattcggctgtcttc
cctggccttcagggcggcccgctgatgcatgtgatcgctgccaaggcggttgccttcggc
gaagccttgcagcccgaattccaggattatgcagcccaggtggtcaagaacgccaaggcc
ctgtccgaaaccttggtcaagggtggcctcgatatcgtgtccggcggcaccgacaaccat
ttgatgctggtcgacctgcgcaagaagaacgccaccggcaagcgcgccgaggcagccctt
ggccgcgcctatgtcacctgcaacaagaacggcattccgttcgatcctgaaaagcccttc
gttacttctggtgttcgccttggcacgccagctggcacgacccgtggcttcaaggaggct
gaattcatcgaaatcggcaatctgatcgttgaggttctcgacggtctgaaggttgccaat
tccgacgagggcaatagcgccgtcgaggcaagcgtgcgcgataaggtcgttggcctgacg
ggtcgtttcccgatgtatccttacctgtaa
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