Bifidobacterium breve UCC2003: Bbr_1737
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Entry
Bbr_1737 CDS
T02534
Symbol
rne
Name
(GenBank) Ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bbru
Bifidobacterium breve UCC2003
Pathway
bbru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bbr_1737 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbru03019
]
Bbr_1737 (rne)
03009 Ribosome biogenesis [BR:
bbru03009
]
Bbr_1737 (rne)
Enzymes [BR:
bbru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Bbr_1737 (rne)
Messenger RNA biogenesis [BR:
bbru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bbr_1737 (rne)
Ribosome biogenesis [BR:
bbru03009
]
Prokaryotic type
rRNA processing factors
Bbr_1737 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
RD3
Motif
Other DBs
NCBI-ProteinID:
ABE96403
LinkDB
All DBs
Position
complement(2148795..2151857)
Genome browser
AA seq
1020 aa
AA seq
DB search
MPTENREGFVGDETDNSTVSNTESQASGASEPNAEASQPTRRRRGGRRVVRGAGAAGASL
ELQVQEHAAPLFEAPALSDADASASTGTADNNVSDDEKRPTRRTRSRRSADNADYEDRST
RRRAVADDDDAPRPVRRRRAVSDDLEEDDERPIRRRRVASDDFDEDNDRLVRRRRSVIDD
LEDDDAPRSSRRRTAVDDSDEDGDRPVRRRRSTTNDRDDRDDEPRSARRTRSRRSSEDAR
EENPDERVLDVIDALPAGHESARRGKPMTSLLFQEPVLPDMRHDDRDDEEDDGEQRSRSS
RRSRAREDEADYEERPSRSRRSSRSDHGDHDDHDDRDDSRNNRRRNETQDDFDADGQSDS
RRSRRSRRLNAQERRAAAEVEQIEEDLELDDITYSPIAEEENDEESDSTRTRSRRRRRRG
SRNESGASNNDSESSENNGDDSRRRRDDRDERDRDDDEEQTVTRRRRRRRGGKNAESGDE
QDDQQLTRRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQSQLMEQDFLARRENV
DRLMVVREKEHHTQISVVEDNILVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG
QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG
RFLVLVPSGGMTGVSRKLSERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAIVKDLES
LVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYDRIEEY
LDTMAPDLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMT
TIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLV
LRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDQPT
VSADYDDPYALRGGDPFVKTNKHGRGTAPAPEPAGSSADVKAKLAQIAAAAVAANNTEEE
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
gtgcccactgagaaccgtgaaggtttcgtcggtgacgaaaccgataactcaaccgtatcc
aataccgaatcacaggcttcgggagcttccgagccgaacgccgaagcatcgcagccgact
cgccgccgtcgcggtggccgtcgtgtagtgcgtggtgccggtgctgccggcgcatccctt
gagctgcaagtccaggaacacgccgctccgctgttcgaggcacccgcgttgtctgatgcc
gatgcatctgcttccacaggaactgccgacaataacgtctccgatgacgagaagcgtccg
acccgccgcacccgtagccgccgctctgccgataatgccgattatgaggatcgttcgact
cggcgtcgtgctgtggctgatgacgatgatgcgccgcgtccggtccgccgtcgtcgcgcg
gtgtccgatgatctcgaggaagacgatgagcgtccgattcgccgtcgtcgcgttgcatcc
gatgattttgatgaagataacgatcgtctggtgcgtcgccgtcgttctgtaattgacgat
ctcgaagatgatgatgcgccgcgttcatctcgccgccgtactgcggtcgacgactccgat
gaggatggcgatcgtccggtgcgtcgccgtcgttccactacgaatgaccgcgatgaccgc
gatgacgagccccgctcggcccgtcgtactcgcagccgccgttcttcggaagacgcgcgc
gaagaaaaccccgatgagcgcgtgctggatgtgattgatgcgctgcctgcagggcatgaa
tccgcccgtcgtggcaagccgatgacttccctgctgttccaagagccggtgctcccggac
atgcgacatgacgatcgtgatgatgaggaagatgatggcgaacagcgttcccgctcttct
cgtcgctcccgcgcccgtgaggatgaggccgattacgaggaacgcccgtctcgttcccgc
cggtcgagccgcagcgatcacggcgatcatgatgatcacgatgaccgcgatgacagccgc
aataatcgtcgccgtaatgagactcaggatgatttcgacgctgatggccagtccgattct
cgccgttctcgccgttctcgccgcctgaacgcccaggagcgccgtgctgccgctgaagtc
gagcagattgaggaagacctcgagctggatgacattacgtactcgccgattgctgaagag
gagaacgacgaagagtccgactccacccgcacccgttcccgccgtcgccgtcgccgtggc
tcccgcaacgagtccggtgcttccaacaacgacagcgagtcctccgagaacaatggtgac
gattcccgtcgccgtcgcgatgatcgcgatgagcgcgaccgtgatgatgacgaggagcag
accgttacccgccgtcgccgtcgccgccgcggaggcaagaatgccgagagcggtgatgag
caggacgatcagcagctgactcgccgctcccgcaagcagcagtacatcgatgagatcacc
gatgtggaaggctccacccgtcttgaggccaagaaacagcgacgccgtgacaatcgtcgt
gagcgtagccgccagagccagctcatggagcaggatttcctcgcacgccgtgagaacgtc
gatcgcctcatggtggtgcgcgagaaggaacatcacacccagatttccgtggtggaagac
aacatcctggtcgagcattacgtctccgacatccaggaagtgcagaccgtgggcaacatc
tacctcggccgtgtacagaacgtgctgcccagcatggaagccgctttcgtggacatcggc
caggcccgtaacggcgtgctctacgccggtgaggtcaactgggacgccgcgcgtctcgaa
ggccagccgcgccgcatcgagttggcgttcaagtccggcgacccggtgctcgtgcaggtc
accaaggatccgatcggacacaagggagcccgcctgacttctcaggtcacgctcgccggc
cgcttcctggtgctcgtgccgtccggcggcatgaccggcgtgagccgcaagctctccgaa
cgcgaacgtagccggctcaagggcatcgtctccaagatcgccccgaaggatatgggtgtc
atcatccgtaccgcagccgagggtgcctccgaggaagccatcgtcaaggatcttgagtct
ttggttcgccagtgggagcgcatcaacgccaagcgtgaggaattctggcatggcaagcgc
ccgaagctcctgcagggcgagcccgatgtggctatccgtgtggtgcgcgacatcttcaac
gatgacttcggcaagctcatcgtcgaaggcgacaaggtctacgaccgtatcgaggagtat
ctcgacaccatggcccccgacttgaaggataagctggagaagtgggacccggccgagcat
gagggcaaggacgtgttcgacaagtggcagatcgactcccagctcagaaagggcatggag
cgtcaggtctacctgccgtctggtggttcgatcgtcatcgaccgcactgaagccatgacc
accattgatgtgaacaccggccgcttcatcggcaagggcaagtcccttgaggagacggtg
acgcgttgcaatttggaggcctctgaggaaattgcacgtcagctgcgactgcgcgacatc
ggcggcatggtgatgattgactatgtggatatggtcatgcccgctaaccgtgacttggtg
ctgcgccgtctagtcgaatgcctggcgcgcgaccggaccaagcatcaggtggccgaggtc
acctcgcttggtctggtgcagatgacccgtaagcgcatcggtcagggcctggtcgaggcg
ttctccgaggaatgcccgacttgcaagggtcgtggctttatcctgcacgatcagccgact
gtttccgccgactacgatgacccgtacgcattgcgcggcggtgatccgttcgtcaagacc
aacaagcatggtcgaggcactgccccagctccggaaccggccggctccagcgctgatgtc
aaggccaaactggcccagattgcagctgctgccgtggccgccaacaacaccgaggaggag
tag
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