Brachybacterium halotolerans subsp. kimchii: Bra3105_14500
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Entry
Bra3105_14500 CDS
T08518
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bhh
Brachybacterium halotolerans subsp. kimchii
Brite
KEGG Orthology (KO) [BR:
bhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bra3105_14500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhh03400
]
Bra3105_14500
Enzymes [BR:
bhh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bra3105_14500
DNA repair and recombination proteins [BR:
bhh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bra3105_14500
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UEJ82044
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All DBs
Position
3234140..3236728
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AA seq
862 aa
AA seq
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MSAREQKVEVDGRSLRLTHLDKVMYPSTGTTKGEVIDYYRRAAGVMVPQAARRPATRKRW
VDGVGTAEHPGKVFFRKDLEDSAPDWVPRADLEHHDGISTYPLVDEAAVLVWLAQLAALE
IHTPQWRFDADGESSCPDRLVLDLDPGEGAGLDDCAQVALWCRDLLAEMELDSYPVTTGS
KGIHLYAPLDGTSAADEVAELAHRLARALEDEHPDHVVSDMKRSLRRGKVLVDWSQNNGH
KTTVCPYSLRGRERPTVAAPRTWDEIEDSSLAQLDFEEVLARVEDGTDPLAPLGLEQHDS
SAAGGASADDEASAGAADDRLRAYRSKRDARRTPEPVPDATPEAARQGSQDRADAAQRAI
EAQDPMFVIQEHHASSLHWDFRLQHDGVLVSWAVPKGPPLEVDVNRLAVQTEDHPLEYGT
FEGSIPQDEYGGGEVTIWDSGLVEIEKWREGREVIAVCRGREDGGLGGVPRRFAFIHTGG
MGRGARTAAAKKKAKADWLLHLMKDQPEEGTAGAHEETGAHEETGDREQTGAREETDDRE
EISPMLATSGSREDTDEDDWAFEMKWDGVRAIATITPTGVRLTSRGGTDVTATFPELGEL
EDAVGGTGSGTGRIVLDGEIVALDSHERPSFSRLQRRLGLTSRRDVERAQEETEVHLMVF
DLLEADGRSLLRTPYRQRRDALFATVDPTEHVKLPHAVHGDVDHAIARSQELQLEGVMAK
KESSIYQPGRRARTWLKIKNAHHQEVVVVGWREGRGARAGGIGSLLLAVPDEDGNLHYVG
RVGTGFSEDDLEHAHERLRSRSRKTPPVSGVPSADARDAHWVRADLVGEVRHAERTPDDR
LRRPVWRGWRPDKDADEVRWES
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcacgggagcagaaggtggaggtcgacggccgctcgctgcggctcacgcacctc
gacaaggtcatgtatccctcgaccggcaccacgaagggcgaggtcatcgactactaccgg
cgcgccgccggtgtgatggtgccgcaggccgcgcgccgaccggcgacgcggaagcgatgg
gtcgacggggtcggcaccgccgagcaccccggcaaggtcttcttccgcaaggatctcgag
gactccgcgccggactgggtgccgcgagcggacctcgagcaccacgacggcatctccacc
taccccctcgtggacgaggccgccgtgctggtgtggctcgcccagctcgcggcgctcgag
atacacaccccgcagtggcgattcgacgccgacggcgaatcgtcatgccctgaccgcctc
gtgctcgatctcgacccgggagagggcgccggtctcgacgactgcgcccaggtggcgctg
tggtgccgggatctcctggccgagatggaactcgactcctatcccgtgacgaccggctcg
aaggggatccacctctatgccccgctggacgggacctccgctgccgacgaggtcgcagag
ctcgcgcaccgcctcgcgcgagccctcgaggacgagcatcccgaccatgtggtcagcgac
atgaagaggtccctgcgccgagggaaggtcctggtcgactggtcgcagaacaacgggcac
aagaccacggtgtgcccatattcgctgcgcggcagggagcggccgacggtcgccgcgccc
cgcacctgggacgagatcgaggactcctccctcgcccagctcgacttcgaggaggtcctc
gcgcgcgtcgaggacgggaccgatcctctcgcgccgctcggcctcgaacagcatgactcg
tcggccgcgggaggggcgtcggccgacgacgaggcgtcggccggggccgcggacgatcga
ctgcgcgcctatcggtccaagcgcgacgcgcgccgcaccccggagcccgtcccggatgcg
accccggaggcggcacggcagggatcgcaggaccgggccgatgcggcgcagcgagcgatc
gaggcacaggacccgatgttcgtgatccaggagcaccacgcctcgagcctgcactgggac
ttccggctccagcacgacggggtgctcgtctcctgggccgtccccaagggaccgccgctc
gaggtggacgtgaaccggctggcggtgcagacggaggaccacccgctcgagtacggcacc
ttcgaggggagcatcccgcaggacgagtacggcgggggagaggtcaccatctgggacagc
ggcctcgtcgagatcgagaagtggcgcgagggccgtgaggtcatcgccgtctgccgcgga
cgcgaggacggagggctcggaggcgtgccgcgccgcttcgccttcatccacaccggaggc
atgggccgcggcgccaggactgcggccgcgaagaagaaggcgaaggccgactggctgctg
cacctcatgaaggaccagcccgaggagggaacggcgggtgcccacgaggagaccggtgcc
cacgaggagacaggcgaccgcgagcagaccggtgcccgcgaagagacagacgaccgcgag
gagatcagcccgatgctcgcgacgtccggctcgcgcgaggacaccgacgaggacgactgg
gccttcgagatgaaatgggacggtgtgcgcgcgatcgccacgatcaccccgaccggtgtg
cgcctgaccagccgcggcggcacggacgtcaccgcgacgttccccgagctcggggagctg
gaagacgcggtgggcggcaccggctccgggaccggacgcatcgtcctggacggtgagatc
gtcgccctggactcccacgagcggccctcgttctcgcgcctccaacggcgtctgggactc
acctctcgacgcgacgtggagcgggcgcaggaggagacggaggtccacctgatggtcttc
gacctgctcgaggccgacggcaggtcactgctgcgcacgccgtacaggcagcggcgcgac
gccctgttcgcgaccgtcgaccccaccgagcacgtgaagctcccgcacgccgtgcacggg
gacgtggaccacgcgatcgcccgctcccaggagctccagctcgagggcgtgatggcgaag
aaggagtcgagcatctaccagcccgggcgccgtgcccgcacctggctcaagatcaagaac
gcccatcaccaggaggtcgtcgtcgtgggctggcgcgagggacggggagcgcgcgcaggc
ggcatcggctccctgctgctggccgtcccggacgaggacgggaatcttcactacgtcggg
cgcgtgggcacaggcttcagcgaggacgatctcgagcacgcgcacgagcgcctccgctcg
cgatcgcggaagacgccgccggtgagcggggtcccgagcgccgatgcccgcgacgcccac
tgggtgcgcgccgacctcgtgggcgaggtccgccacgccgagcgcacccccgacgacagg
ctgcgccggcccgtgtggagggggtggcgtcccgacaaggacgccgacgaggtgcgctgg
gagtcctga
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