Bordetella holmesii 44057: D558_2274
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Entry
D558_2274 CDS
T03379
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D558_2274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhm03019
]
D558_2274
03009 Ribosome biogenesis [BR:
bhm03009
]
D558_2274
Enzymes [BR:
bhm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D558_2274
Messenger RNA biogenesis [BR:
bhm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D558_2274
Ribosome biogenesis [BR:
bhm03009
]
Prokaryotic type
rRNA processing factors
D558_2274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AIT26935
LinkDB
All DBs
Position
complement(2143723..2146854)
Genome browser
AA seq
1043 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSFFKEGVDVRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGENRQELRDTMEQLDVPQGMSIIARTAGIGRSVEELQ
WDLAYLMQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAV
DVNSARSTRGADIEETALRTNVEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCTGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATFLLNEKRADIAKMEARLKVNLVLIPNKHLETPH
HHIERLRHDDPRLEEPKTSFELAEAPATDLTWSPREQEIKTRPEALVKGITPAQPAPVSA
PSPVSPTQKPAEGASLGSLFKRFMNWLSGGNEPAKPVEKPTEQAKRSAGGNRGKRGHDGQ
ERRGDRHGADRNRNRRTPDSEGQEQRNVRGGRRPEEQRSDTLRNEAQRPEPRGERNEQRN
EARQARNVEAQANVARPAATETADEAATPRNGRNRRGRGRGRREDGTIDAQGDVQEGKMS
EQETMVAALAESVASALPAVAVQAPAADEEITGTDNEAPLSADGEGQADPERKRRRRRSR
RGRRSQEDGATLDADGQPIETGDDADEPQSNASALIPAPAYGVTATSEPVKVEEPQPDLA
PAAVPVAPAKPAPVDNAVVPVAAAAPVAAGASELSTAAAVPAAPVAPASPVAAVEPAAAP
ASAPVAPVTPEATVAPAAAEPVVATAPAVPAVQPDTAAATAEVAPVVPAQTTPAQTAAEP
AATEPAAVVAAPKPASAPIVVGEAALNAVVQAAGLTWVQTDPARQAQSQAQSAADQAPAR
LGRERKPVAQASSAPLVQVETAR
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgtttaatgcgacgcaccaggaagaactacgcgtcgccatcgtcgat
gggcaaaaactcatcgacctcgatatagaaaccgccggccgcgaacagcgcaaaggcaat
atttacaaaggcgtcattacccgtatcgaacccggccttgaggcctgcttcgtcaactac
ggcgaagaccgacacggctttctgcctttcaaagaagttgcccgcagcttcttcaaagaa
ggcgtggacgtacgcagcgcccggatccaagacgcgctacgggaaggccaggaactgatc
gttcaggtcgagaaagaagagcgtggcaacaagggcgcggccctgaccacctttatttcg
ctggccggccgttacctcgttctgatgcccaacaacccccgaggtggtggcgtttcgcgc
cgcgtcgagggtgaaaatcgccaggaactgcgcgacacgatggagcagctcgatgtgccg
caaggcatgagcatcatcgcccgcaccgccggcatcggccggagcgtggaagagttgcag
tgggatcttgcctacctcatgcaattgtggacggctatcgacggagccgcccgcgacaat
gccgcccccatcctgatttatctcgagtccagcctggttatccgggccattcgcgactac
ttctcgcccgaaatcggcgaaatcctgatcgatactgacgaaatcgctgatcaggccacg
gccttcatgagcgtggtcatgccggacaatgtccagcgcgtcaaacgctatcgcgacgac
atcccgctcttttcgcgctttcagatcgagcaccagatcgaaacggcgtactcgcgcacc
gtacaactgccctccggcggcgccgtggtcatcgaccataccgaagccttggtggccgtc
gacgtgaactcggcccgctccacgcgcggcgctgatatcgaggaaacggccctgcgcacc
aacgtggaagccgccgatgaagtggcccgccagttgcgcctgcgcgacctcggtggcttg
atcgtcatcgatttcatcgacatggaagacagcaagaatcaacgtgctgtcgagcaacgc
ctgcgggacgccctgcactttgaccgtgcccgcgtgcagatgggcaagatttcgcgcttt
ggcctcatggagctgtcgcgccagcgcctgcgcccggccctgaacgagggctcgcacatc
acctgcccgcgctgcacgggcaccggtgtgatccgcgacgccgagtccagcgcgctgcac
gtgctgcgcctgctgcaagaagaagccatgaaggaaaacaccgccgccgtgcatgcacag
gttccggtggatgtggctaccttcttgctaaatgaaaagcgtgccgacatcgccaagatg
gaagcccgcctgaaggtcaacctggtgctcatcccgaacaagcacctggagacgcctcat
catcatatcgagcgcctgcgtcacgacgatccgcgcctcgaagagcccaagaccagtttc
gaactggccgaagcgccggctaccgatctcacctggagcccgcgcgagcaggaaatcaag
acgcgcccggaggccttggtcaagggcatcacaccggcgcagcctgcaccggtatccgcc
cctagccccgtcagcccgacgcagaagccggctgaaggtgccagcctgggcagcttgttc
aagcgtttcatgaactggctgtcaggaggcaatgaaccggctaagcccgtagaaaagccc
accgaacaagccaagcgcagtgccggtggtaaccgcggcaagcgcggccacgatggccag
gagcgccgtggcgatcgccatggcgccgatcgcaaccggaaccgtcgcaccccagacagc
gaaggccaggaacagcgcaatgtccgtggcggccgccgtcctgaagagcagcgcagcgat
actctccgcaacgaggcccaacgccccgaaccgcgcggcgaacgcaacgagcagcgcaac
gaagcccgccaggcacgcaacgtcgaagctcaggccaacgtcgcacgccccgccgcgacg
gaaaccgcagacgaagcggccacgccccgcaatgggcgcaatcgccgcggccgcggccgg
ggtcgccgtgaagacggcaccatcgatgcgcagggcgatgttcaagaaggcaagatgagc
gagcaggaaaccatggtggcggcactggccgagtccgtggcctcggctctacccgctgtc
gccgtccaagctcccgcagccgacgaagagatcacgggtaccgacaacgaggcgccgttg
agcgccgacggtgaaggccaggccgacccagagcgcaagcgccgtcgccgccgcagccgc
cgtggtcgccgcagccaggaagacggcgccacgctggatgccgatggtcagcccatcgaa
accggtgacgacgccgacgaaccccagagcaacgcctcggccctgattcctgcaccggcc
tatggtgtcactgccacatccgaaccggtcaaggtcgaagagccccagcctgacctcgcc
cctgctgcggtaccggtcgcccccgcgaagcctgcccccgtggacaacgccgttgtcccg
gttgctgccgctgcgccagttgctgccggagcgtcggagctctccaccgctgcggctgtg
cctgccgcgccagttgcacctgccagcccggttgctgcggtagaacccgcggcggctccg
gcgagtgctcctgttgctccggtgacgcctgaagccaccgtggcaccggccgcggcagaa
cccgtggttgctacggcccccgccgtgcctgcggtccaacccgatacggctgcggcgacc
gccgaagtcgctccggttgtccctgcacagacgacgcctgcgcaaaccgccgccgaaccg
gccgcgaccgaaccggccgctgtcgttgccgcgcccaagccggcgtccgctccgatcgtt
gtcggcgaagcggccctgaacgccgtggtccaagccgccggcctgacctgggtacaaacg
gaccctgcccgccaggcccaatctcaagcgcaaagcgcggcagaccaagccccggcacgc
ttgggacgcgagcgcaagcccgtagcccaagcctcgtccgcaccgctggtgcaggtcgaa
acggcgcgttaa
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