Brachyspira hampsonii: BHAMNSH16_05090
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Entry
BHAMNSH16_05090 CDS
T05655
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bhp
Brachyspira hampsonii
Brite
KEGG Orthology (KO) [BR:
bhp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bhp03016
]
BHAMNSH16_05090
Enzymes [BR:
bhp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BHAMNSH16_05090
Transfer RNA biogenesis [BR:
bhp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BHAMNSH16_05090
Prokaryotic type
tRNA splicing ligases
BHAMNSH16_05090
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ASJ21052
UniProt:
A0A1E5NL13
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All DBs
Position
1216922..1218184
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AA seq
420 aa
AA seq
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MIELKGKYNKDCKIFTDNIDEESYSLIYNILNEKASENVKVRIMPDTHIGKGIVIGFTMP
LTDRVNPFHIGVDIGCGMLTSKLNDNIKNIGLEKIDKTIKQNIPMGFKTHKKSNYSFFNF
KELNEIMRNFIIGYNKRYNTNFAIFEIDNDYIEKLCQRIEMDLEKFHNSIGTLGGGNHFI
EIGTSINNDYFLTIHSGSRNFGTMVCEYHVRNNKKRIEEAKDFLNSANDANDKTTKEYYE
YNEIVRSGDYIYGKAMFDYCIDMVISQYYAKINREAMLNIIKDSLNIKLEDTFSSIHNFI
DFEDFIIRKGAIRSYKGEKIIIPFNMRDGILICEGKSNEDWNFSAPHGAGRVLSRIQARK
QIDMKDFIESMKGIYSSSISKNTLDEAPQAYKDSKEIEKLIMPTADIIDRLKPVLNIKAS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgatagagttaaaaggaaaatacaataaagactgcaaaatatttactgacaatatcgat
gaagaatcttattctttgatttataatattttaaatgaaaaagcaagcgaaaatgtgaaa
gttaggataatgccggacactcatattggaaagggtatagtaataggttttacaatgcct
ttaactgatagagtaaatccttttcatataggcgttgatataggctgcggaatgcttact
tcaaaattaaatgataatataaaaaatattgggcttgaaaaaattgataaaactataaaa
caaaatattcctatgggttttaaaactcataaaaaaagtaattattcattttttaatttt
aaagaattaaatgaaattatgagaaactttattataggttataataaaagatataataca
aactttgccatatttgagatagataatgattacatagaaaaattatgccaaagaatagaa
atggatttagaaaaatttcacaactctataggaacattaggaggaggaaatcattttata
gaaataggaacctccattaataatgattactttctcactatacattcaggctcaagaaat
ttcggcacaatggtatgcgaatatcatgtaagaaacaataaaaaaagaatagaagaagca
aaagattttttaaatagtgcaaatgatgctaatgataaaacaacaaaagaatattatgag
tataatgaaatagtaagaagcggagattatatatacggcaaagctatgtttgactactgc
attgatatggtaatatctcagtattatgcaaaaataaaccgagaggctatgcttaacatt
ataaaagattctcttaatataaaattagaagatactttttcatctatacataattttata
gattttgaagattttataataagaaaaggtgccataagaagttataagggagaaaaaatt
ataattccttttaacatgcgggacggtatactaatatgcgaaggaaaaagcaatgaagat
tggaatttttcagcacctcatggagctggaagagtgctttcaagaatacaggcaagaaaa
caaatagatatgaaagattttattgaatctatgaaaggtatttattcaagcagcatatca
aaaaatactttagatgaagctcctcaggcatataaagattcaaaggaaatagaaaaatta
ataatgcctacagcagatataatagacagattaaaacctgtactcaatataaaagcctct
taa
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