KEGG   PATHWAY: bmaz00020
Entry
bmaz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia mallei NCTC 10247
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bmaz00020  Citrate cycle (TCA cycle)
bmaz00020

Module
bmaz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bmaz00020]
bmaz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bmaz00020]
bmaz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bmaz00020]
bmaz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bmaz00020]
bmaz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bmaz00020]
Other DBs
GO: 0006099
Organism
Burkholderia mallei NCTC 10247 [GN:bmaz]
Gene
BM44_1102  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
BM44_3256  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BM44_3267  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BM44_2845  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BM44_2087  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
BM44_2086  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BM44_2085  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BM44_3748  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BM44_1651  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BM44_2955  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BM44_2954  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
BM44_3979  succinate CoA transferase family protein [KO:K18118] [EC:2.8.3.18]
BM44_3259  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BM44_3757  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
BM44_3258  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
BM44_3261  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BM44_3260  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BM44_3945  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
BM44_2735  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BM44_3263  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BM44_2497  phosphoenolpyruvate carboxykinase family protein [KO:K01596] [EC:4.1.1.32]
BM44_1649  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BM44_3248  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BM44_1650  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bmaz00010  Glycolysis / Gluconeogenesis
bmaz00053  Ascorbate and aldarate metabolism
bmaz00061  Fatty acid biosynthesis
bmaz00071  Fatty acid degradation
bmaz00190  Oxidative phosphorylation
bmaz00220  Arginine biosynthesis
bmaz00250  Alanine, aspartate and glutamate metabolism
bmaz00280  Valine, leucine and isoleucine degradation
bmaz00350  Tyrosine metabolism
bmaz00470  D-Amino acid metabolism
bmaz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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