Brenneria nigrifluens: EH206_08335
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Entry
EH206_08335 CDS
T06070
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bng
Brenneria nigrifluens
Pathway
bng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EH206_08335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bng03019
]
EH206_08335
03009 Ribosome biogenesis [BR:
bng03009
]
EH206_08335
Enzymes [BR:
bng01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EH206_08335
Messenger RNA biogenesis [BR:
bng03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EH206_08335
Ribosome biogenesis [BR:
bng03009
]
Prokaryotic type
rRNA processing factors
EH206_08335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QCR04181
LinkDB
All DBs
Position
complement(1799801..1803103)
Genome browser
AA seq
1100 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLQLPDGMGLIVRTAGVGKSAEAL
QWDLAFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILERA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDSVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCGGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVQIASYLLNEKRDAVNAIETRQGGVRAIIVPHDGMQ
TPHYSVVRVRKGEEKPSLSYLLPQLLETEAQQLQEEQTVERKQPEQPALATFTMPDMPTE
ETVPEVEKAAPVAQGAPAQPSIVSRFLGALKGIFAAEPAVETVDKADEQKNESANAGDAQ
RQERRPARRQGNNRRDRGTRDNREPREDQRRNKRQQTEAVAETPAVEATEKAAIDEQPRR
EPRAERQRRRPDEKRQQQEAKAQNAVIEAAIDAPEENIAEQDKPAQVMPRRQRRQLTQKV
RVQSASDEAVEKATPALAFETAPAQSNPVDEQIIADNDDAENTSAFDANRGDNAENGGMP
RRSRRSPRHLRVSGQRRRRYRDERYPLQSPISLEYASASPEIASGKVWISYPVAQSPQLE
QAEEQVADENIVSAATPLLPAVVDAAVPVIETVTQQTPTVEAGPASAAYDETITAAAKED
QAEEIVPPAAQESAPQAEEESSAAERTTDTPVVETTVSETAAENDATVAATDATEEISAA
EAPINASTADAAVEIASETPADTVISLSQAVEEEKTPAAEAEASSPTRDTAAASPAVESS
AEAAAQPTQADAGASAAPRYKLHATAPMTKAPAPDNQTEPARQSDWQRPVYQFAGKGAAG
GHAAVNQATAPATKPPAISE
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgttgattaacgcgactcaacaggaagagttgcgtgttgccttggttgat
ggtcaacgactgtacgatctggacatcgaaagtcccggtcatgaacagaagaaagcgaat
atctacaaaggtaaaatcacccgtattgaacccagccttgaagccgcttttgtcgattat
ggcgccgaaagacacggttttctccctctcaaagagatcgctcgcgaatattttcccagc
aactactcctctcatggtcgtcccaacatcaaagatgtattgcgtgaaggccaggaagtc
attgttcaggtagataaagaagagcgaggcaacaaaggcgcggcgctgacgacttttatc
agcctggccggcagctatctggtcctgatgccgaacaacccccgcgccggcggtatttca
cgccgtatcgagggggacgatcgaaccgaactgaaagaggcgctaggctctttacagttg
cccgacggcatggggttgattgtgcgtaccgccggcgtgggtaaatccgccgaggcgctg
caatgggatctggctttccgtctgaaacactgggaagccatcaaaaaagcggcggaaggc
cgtccggctccgttcctgattcaccaggaaagcaacgtgattgtgcgcgctttccgcgac
tatctacgcccggatatcggcgaaattctgatcgacaaccccaagatcctcgaacgcgcc
aaagagcatatcgccgccctgggccgccccgatttcagcagtaaaatcaaactttacagc
ggtgaaatcccgctgttcagccactatcagattgagtcccagattgaatccgccttccag
cgcgaagtgcgcctgccttcgggcggctccatcgttatcgacaccacggaagccctgacg
gcgatcgatatcaactcggcgcgcgcgacgcgcggcggcgatattgaagaaacggcgttc
aataccaacctggaagcggcggatgaaatcgcccgccagctgcggctgcgcgacctgggc
ggcttgatcgtcatcgactttatcgatatgacgccggtgcgccaccagcgtgaagtggaa
aaccgcctgcgggattccgtacgccaggatcgcgcccgcattcaaatcggccggatttca
cgtttcggcctgctggagatgtcccgccagcgcctcagcccgtcgctgggcgaatctagc
caccacgtctgcccgcgctgcggcggcaccggcaccgtgcgcgataacgaatcgctttct
ctgtctattctgcgcctgattgaagaagaagcgctgaaggaaaacaccaaagaagttcac
gccatcgttccggtgcagattgcctcttatctgctgaacgagaagcgtgatgcggtcaac
gccatcgaaacccgtcagggcggcgttcgcgccatcatcgttccccatgacggtatgcaa
acgccgcactactccgtggtgcgcgtgcgtaagggcgaagagaaaccctcgctcagctat
ctgttgccgcagttgctggaaaccgaagcgcagcaactgcaggaagaacagacggtcgaa
cgtaaacagcccgaacagccggcgctggccaccttcaccatgcctgacatgccgacggaa
gagacagtgccggaagtggaaaaagccgctcctgtggctcaaggggcccctgcccagccg
agcattgtcagccgtttcctcggcgccctgaaaggcattttcgccgccgaaccggctgtg
gaaaccgtagataaagcggatgagcagaaaaacgagtcggctaacgccggtgatgcgcaa
cgtcaggaacgtcgtcctgcgcgccgtcaaggcaacaaccgccgcgaccgcgggacacgg
gacaatcgtgaaccacgcgaagatcaacgccgcaataaacgtcagcagaccgaagccgtc
gctgaaacaccggcggtagaggcaactgaaaaagccgccatcgacgaacagccgcgtcgt
gaaccgcgcgcggaacgtcagcgtcgtcgtccggatgaaaaacgccagcagcaggaagcg
aaggcgcaaaacgcggttattgaggcagcgatcgacgcaccggaagagaacatcgccgaa
caggataagcccgcgcaggttatgccgcgccgccagcgtcgccaactgacgcagaaagtg
cgtgtgcaatctgcaagcgatgaagcggttgaaaaggcgacgccggcactggcgtttgaa
acggcgccggcgcagtccaatcccgtcgatgagcagattatcgctgacaacgacgatgcg
gaaaatacctcggcctttgacgccaaccgcggcgacaacgccgaaaatggcggaatgccg
cgccgttcgcgccgttcgccgcgtcatctgcgcgtaagcggtcagcgtcgtcgtcgttac
cgtgatgaacgctatccattgcagtcgccgatatcattggaatacgcctccgcttcgccg
gaaatcgcgtcgggcaaagtatggattagctatcctgtcgcgcaatccccgcagttggag
caggccgaggagcaagtagcggatgagaatatcgtttctgccgccacgcctctgctgccg
gccgtcgtggatgccgccgtcccggttattgagaccgtaacacagcaaacgccgacggtt
gaagcggggccggcgagcgcagcgtatgatgagacgattaccgcggcggctaaagaggat
caggcggaagaaatcgtgccgccggcagcgcaagagtccgcgcctcaggccgaggaagaa
tcatcagccgcggagcgaacaacggacacgccggttgttgaaaccacggttagtgagacg
gcggctgagaatgacgccaccgttgcggcaaccgacgcaaccgaggaaatttctgctgca
gaggcgccgattaacgctagcacggcggatgcggctgtcgaaatagcctcggagacgccg
gcggatacagtgatttctctgtcgcaggcagtcgaggaggaaaaaacgccggcggctgaa
gctgaggcaagttccccgacgcgcgatacggcggcggcaagccccgcggtcgagtcgtct
gccgaggcggccgctcagccaactcaggccgacgccggcgcttccgctgcgcctcgctat
aagcttcacgcgacggcgccgatgacgaaagccccggccccggacaaccagacggaaccg
gcgcgtcaaagcgactggcagcgtccagtgtatcagtttgccggcaaaggcgccgccggc
ggccacgcggccgttaatcaggctacggcgccggcgaccaaaccgcccgcaataagcgaa
taa
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