Burkholderia pseudomallei MSHR346: GBP346_A2983
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Entry
GBP346_A2983 CDS
T00894
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bpr
Burkholderia pseudomallei MSHR346
Pathway
bpr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GBP346_A2983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpr03019
]
GBP346_A2983
03009 Ribosome biogenesis [BR:
bpr03009
]
GBP346_A2983
Enzymes [BR:
bpr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GBP346_A2983
Messenger RNA biogenesis [BR:
bpr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GBP346_A2983
Ribosome biogenesis [BR:
bpr03009
]
Prokaryotic type
rRNA processing factors
GBP346_A2983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACQ98274
LinkDB
All DBs
Position
I:2904411..2907677
Genome browser
AA seq
1088 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPER
PAPSPAPQRQSAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPAR
ERAERGERGEKAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGKETRE
PREGREARGGRDNREGREARETREPREPREQREPREAREQREARERAETVDAAEAPRGER
RERGERRKPAPHVATLETVNRGESAHAETAEKPLYAPGAEAGVDADSNARDGEERRRRRR
GRRGGRREREDEVAGAVQAAEGSEGVTAEAEALEHAEHAQQRVAPVANQAPEHAAQAGAG
VAAAAAATVAAEAIAHVESGAKVEPQPAAEASAGDTEQAEAVPARSIEAPAQAASTGQAE
AVQAAPAAPAHVTPATADVAREPAAPAETASAETTPAEIPPAEAAPAEAPAAEASEVAAS
AVASAPAPAAEPAPAAEPHRPAPVSAAPASAAPAEADAAREPAAVAEPHVPAAAATPTPA
SVATTPGASLDTALAAAGLVWVNTDTDKLRAAQAAAAQIVQPVRVPRERKPLPPVDATPM
QQVETTHR
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcagaagctcatcgatatcgatatcgaaaccgccggccgcgaacagcgcaaaggcaac
atctacaagggcgtcgtcacccgcatcgaaccgtcgctcgaagcctgcttcgtcaattac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcgtcgacatgcgctccgcgcgcatccaggacgcgctgcgcgagggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggcgcttaccaccttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgacgagcgccaggaactgcgcgagacgatggcgcaactgcagatcccc
gacggcatgagcatgatcgcccgcaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcagctctggcgcgcgatcgaggcggcgtcgcaaagcggc
caccccggccagccgatgctgatctacctcgaatcgagcctcgtgatccgagcgatccgg
gactatttccagccggacatcggcgaaatcctgatcgacacgaccgagatccacgatcag
gcgcgcgcgttcatggacatcgtgatgcccgacaacgtcggcaaggtgaagcgctatcac
gacgacgtgcccctcttctcgcgcttccagatcgagcaccagatcgaaaccgcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaggcgctcgtc
gcgatcgacgtgaactcggcgcgcgcgaccaagggcgcggacatcgaggaaacggcgacc
cgcacgaacctcgaggcggccgacgaagtcgcccgccagttacgtctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggaatcggccaagagccagcgcgaagtcgag
cagcgcctgaaggacgcgctcaagcacgaccgcgcgcgcgtgcagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcgcctgcgcccggccctgtccgaaggcagc
cacgtcacctgcccgcgctgcaacggcacgggccacatccgcgacaccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggagaacaccgcggcgatccac
tgtcaggtgcccgtcgaggtgacggccttcctgctcaacgaaaagcgccaggaaatcaac
aagatcgaatcgcgcttcaaggtcggcgtcgtgctgattccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgatgcgcgcctcgacgatccgcgcgca
tcatggaagatggccgaggaagccgcccgcgagctcgaggcggaaaccggctacagcaag
cgcgccgaggaaacgaagccgcgccaggaagcggccgtcaagggcatcacgcccgagcgg
ccggcgccgagccccgcgccgcagcgccagagcgcgccggaagcggcggcgcccgtggcc
gccgcgcccgcgagcggcggcggtttcatgaaatggctgaagggcctgttcggcgcgcag
ccggctgcggtgcccgcaccggcgcccgccgcgcaggaaacggctgcgcgtccggcgcgc
gagcgcgcggagcgtggtgagcgcggcgagaaggccgagcgcggcgaacgcggcggcgat
cgcaaccgccaccgccgcggcggcgccgcgcagcaggcgggtggacgcgaccaggcggcg
gcaggcggcggccgcgctcaggcgccgcgcgccgagcgcgaaggcaaggaaacccgcgag
ccgcgcgaaggccgcgaagcacgcggcggccgggacaaccgggaaggccgcgaggcgcgc
gaaacccgcgagccgcgcgagccccgtgaacaacgcgaaccgcgcgaggcacgcgagcag
cgcgaagcgcgcgagcgcgccgaaacggtcgacgccgcggaagctccgcgcggcgagcgc
cgtgaacgcggcgagcgccgtaagccggccccgcatgtcgcgacgctcgaaacggtgaat
cgcggcgaaagcgcacatgcggaaaccgccgaaaagccgctgtacgcgcctggcgcggaa
gccggcgtcgacgcggattcgaacgcacgcgacggcgaagaacgccgccgccgccgccgt
ggccgccgtggcggccgccgcgagcgtgaagacgaagtcgcgggcgccgtgcaggcggcg
gaaggcagcgaaggcgtgacggccgaggccgaagcgctcgagcacgccgagcacgcgcaa
caacgcgtcgcgccggtagcgaaccaagcgcccgagcatgccgcgcaagcgggtgcgggc
gtcgcggcggcagccgccgcgaccgtcgcagccgaggcgattgcgcatgtcgagagcggc
gcgaaggtcgagccgcaaccggcggccgaggcatccgccggcgatacggaacaggccgag
gcggtgcccgcgcggtccatcgaagcaccggcgcaagcggcttcgacgggtcaagcggaa
gccgtgcaagccgcaccggccgcaccggcacacgtgacgccggccacggccgacgtcgcg
cgcgagccggccgcgcctgccgaaactgcgtctgccgaaactacgcctgctgaaatcccg
cctgccgaagccgcgcccgccgaagcaccggccgcggaagcgtccgaagtggccgcgagc
gcggtcgcttcggccccggccccggccgcggagcccgcgccggccgccgagccgcaccgg
ccggcgcccgtctcggccgcccccgcctcggccgcgccggccgaagcggacgccgcgcgc
gagccggccgccgtcgccgagccgcacgtgccggcggccgccgcgacccctaccccggct
tcggtggcgaccacgccgggcgcgagcctcgatacggcgctcgcggccgccggccttgtc
tgggtcaataccgacacggacaagctgcgcgccgcacaggccgccgccgcgcaaatcgtg
cagcccgtgcgcgtgccgcgcgaacgcaagccgctgccgcccgtcgacgcgacgccgatg
cagcaggtcgagacgacgcaccgctga
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