Butyrate-producing bacterium SM4/1: CL3_11340
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Entry
CL3_11340 CDS
T02610
Name
(GenBank) Uncharacterized conserved protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bprm
Butyrate-producing bacterium SM4/1
Brite
KEGG Orthology (KO) [BR:
bprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bprm03016
]
CL3_11340
Enzymes [BR:
bprm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CL3_11340
Transfer RNA biogenesis [BR:
bprm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CL3_11340
Prokaryotic type
tRNA splicing ligases
CL3_11340
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
OST3_OST6
Motif
Other DBs
NCBI-ProteinID:
CBL35966
UniProt:
D4MQD0
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All DBs
Position
1002995..1004035
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AA seq
346 aa
AA seq
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MFVLSDESGKWPVRVWLEKKEDIEESCLLQASHLAELPFLHKWVCLMPDTHTGKGMPIGG
VIAAKNVLIPNAVGVDIGCGMAWTGTNVKAEELRGILTGNGNLLQGIVGDILRNIPTGFA
HHKIQMPSYTLDRAFEEFDKYEEDGELLGQLDAGYFQIGTLGGGNHFIELQEDEEGYLSV
MIHSGSRHFGKAVCDYFHQKARELNARWYSQVPDEYRLAFLPLDSREGRQYLNWMQLSMD
FAMENRAKMMLAVKAILEKWIGKYTDLHLAFTEEINCHHNYAALENHYGENVWVHRKGAT
RAREGELAVIPGAMGSFSYIVRGKGNRNPSAPPPTEPGADIPEKEL
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtattatcagatgaatcaggaaaatggccggtcagggtctggcttgagaagaaa
gaagatattgaggagagctgccttctccaggcatcccacctggctgagcttccctttctt
cataagtgggtgtgtctgatgccggatacccacacgggaaaagggatgcccatcggagga
gtgatagcggcgaaaaacgtgctgatacccaatgcagtaggcgtggacatcggctgcgga
atggcatggacggggacgaatgtaaaggcagaggagcttcgcggtatattgactggaaac
gggaacctgctccaggggatagtcggagatattctgagaaatatcccgacaggctttgcc
caccacaagatacagatgccctcctacacccttgaccgtgcctttgaagagtttgacaag
tacgaggaggacggggagcttttaggccagctggacgcgggatatttccagataggaact
ctgggaggcggaaatcatttcattgagcttcaggaggatgaggaggggtatttaagcgtc
atgattcactccggaagccgccatttcggaaaggccgtctgcgactattttcaccagaag
gccagggagctgaatgccagatggtacagccaggttcccgatgaatacaggcttgctttc
ctgcctctggacagcagggagggaaggcagtatctgaactggatgcagctttccatggat
tttgccatggagaaccgggcgaagatgatgcttgccgtcaaggctattctggaaaagtgg
attggaaagtatacggatctccatttggcctttacagaggagatcaactgccaccacaat
tatgcggctcttgagaaccactatggagagaatgtctgggtacacagaaaaggagctaca
agagccagggagggagagcttgcggtgattcccggagctatgggctccttcagctacatt
gtgcgcggcaaaggaaaccggaatccttctgctcctcctcccacggagccgggcgcagat
attccagaaaaggagctatga
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